PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016470948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 382aa MW: 42952.7 Da PI: 9.2932 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.7 | 1.7e-19 | 33 | 124 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ t + s++ +fd+++a XP_016470948.1 33 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLASpTGRFFSSWFFFDNMDA 124 8************************************977776667788999*****************9988776889999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-20 | 32 | 125 | No hit | No description |
PROSITE profile | PS50090 | 6.806 | 34 | 94 | IPR017877 | Myb-like domain |
SMART | SM00595 | 8.2E-10 | 41 | 130 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSSNLDVTVA ETSPLAVEEE KPPAPVRRFP PPCWTQEETL ALIDAYRERW YALRRGYLRT 60 ADWDAVAAAV TSRCPDASPA KTSAQCRHKM EKLRQRYRAE KQRSLASPTG RFFSSWFFFD 120 NMDAMENGTT VASIKLNQQM AEKQVPSIDP NLLKLKINQK NGVNFIEDWT PTIMLNHGVA 180 KTPERNNFSS KIPNGYCFNK EEMPNEVEFG SGFRVKNGIS MKSKRSVMNS TSFDCDEGSE 240 YNGSNASDGF HVRNFGENFG VSSSRRNYGG NVEPNVDSRF STPKLGKKGV GGGGGGGGVK 300 RGRDPMEEMV LSIRLLGEGF MKVEKMKMEM AKEVEQMRME MEMKRNEMIL QSQKQIVDAF 360 VKVLNEVNNK NKNVKTVSPD ES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016470948.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S4A2U5 | 0.0 | A0A1S4A2U5_TOBAC; trihelix transcription factor ASIL2-like | ||||
STRING | XP_009789567.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-31 | Trihelix family protein |