PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016470948.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 382aa MW: 42952.7 Da PI: 9.2932

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016470948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	33	124	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ t + s++ +fd+++a XP_016470948.1 33 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLASpTGRFFSSWFFFDNMDA 124 8**********************************977776667788999*************9988776889999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-20	32	125	No hit	No description
PROSITE profile	PS50090	6.806	34	94	IPR017877	Myb-like domain
SMART	SM00595	8.2E-10	41	130	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MSSNLDVTVA ETSPLAVEEE KPPAPVRRFP PPCWTQEETL ALIDAYRERW YALRRGYLRT 60 ADWDAVAAAV TSRCPDASPA KTSAQCRHKM EKLRQRYRAE KQRSLASPTG RFFSSWFFFD 120 NMDAMENGTT VASIKLNQQM AEKQVPSIDP NLLKLKINQK NGVNFIEDWT PTIMLNHGVA 180 KTPERNNFSS KIPNGYCFNK EEMPNEVEFG SGFRVKNGIS MKSKRSVMNS TSFDCDEGSE 240 YNGSNASDGF HVRNFGENFG VSSSRRNYGG NVEPNVDSRF STPKLGKKGV GGGGGGGGVK 300 RGRDPMEEMV LSIRLLGEGF MKVEKMKMEM AKEVEQMRME MEMKRNEMIL QSQKQIVDAF 360 VKVLNEVNNK NKNVKTVSPD ES

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MSSNLDVTVA ETSPLAVEEE KPPAPVRRFP PPCWTQEETL ALIDAYRERW YALRRGYLRT  60
ADWDAVAAAV TSRCPDASPA KTSAQCRHKM EKLRQRYRAE KQRSLASPTG RFFSSWFFFD  120
NMDAMENGTT VASIKLNQQM AEKQVPSIDP NLLKLKINQK NGVNFIEDWT PTIMLNHGVA  180
KTPERNNFSS KIPNGYCFNK EEMPNEVEFG SGFRVKNGIS MKSKRSVMNS TSFDCDEGSE  240
YNGSNASDGF HVRNFGENFG VSSSRRNYGG NVEPNVDSRF STPKLGKKGV GGGGGGGGVK  300
RGRDPMEEMV LSIRLLGEGF MKVEKMKMEM AKEVEQMRME MEMKRNEMIL QSQKQIVDAF  360
VKVLNEVNNK NKNVKTVSPD ES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016470948.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1S4A2U5	0.0	A0A1S4A2U5_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009789567.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-31	Trihelix family protein