PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 417aa MW: 46058.5 Da PI: 9.4717 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 182 | 204 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg F+ +nL+ H+ + H XP_016464932.1 182 ICSECGDIFTKLENLELHQAVrH 204 5******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.182 | 181 | 209 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 183 | 204 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.89E-23 | 206 | 416 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.4E-13 | 207 | 415 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MAKSKRNPSI KQSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK 60 IPKCEERGDN NKKCKKMKCS GSICSNTKVM HRPEPSPSPP KGRSCKNNGS TKVTLNNNNA 120 ISSFSSASSS SSSFSLHSTS APSTSPTTSS LRGMPFRKLS GCYECRMVVD PIARDPSLRS 180 TICSECGDIF TKLENLELHQ AVRHAVSELG PEDTSRNIVE IIFQSSWLNK KTPVCKIDRI 240 LKIRNTPRTI SRFEEYRDGI KAKATNLPKK HPRCIADGNE LLRFHCTTFM CSLGLNGSSN 300 LCTVPNCNIC TIIKNGFKLA TTDGTKKGIL TTATSGKAHD STRVVPDDDD DDDDDNDKRA 360 MLVCRVIAGR VKKNLDGNLE EYDSIAGAAG VYSNLDELYV FNPKAILPCF VVIYKGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-98 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464932.1 | 0.0 | PREDICTED: uncharacterized protein LOC107787841 | ||||
TrEMBL | A0A1S3ZKP7 | 0.0 | A0A1S3ZKP7_TOBAC; uncharacterized protein LOC107787841 | ||||
STRING | XP_009790722.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10723 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-101 | C2H2-like zinc finger protein |