PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463957.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 527aa    MW: 61681.3 Da    PI: 8.7854
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.84.8e-2512100291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +YneYA  +GFsvrk++ +k++ +g +t+r+++C+keg+r ++k++  + +++r+etrtgC a++ v+++++g++++t++e++HnH+l+p
  XP_016463957.1  12 CYNEYAAAIGFSVRKEYANKNRVHGYVTSRKLTCYKEGYRGKDKRD-PTVQKHRKETRTGCLAHVIVSRQSNGRFRITSFEEKHNHHLVP 100
                     7******************************************999.889999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2212100IPR004330FAR1 DNA binding domain
PfamPF105512.0E-29198292IPR018289MULE transposase domain
PROSITE profilePS5096610.249480514IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-6488511IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-6489516IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEFDSDEHAY DCYNEYAAAI GFSVRKEYAN KNRVHGYVTS RKLTCYKEGY RGKDKRDPTV  60
QKHRKETRTG CLAHVIVSRQ SNGRFRITSF EEKHNHHLVP PSLVHLLPSQ RKIKMAQAYE  120
IDLLDDLGIR PKASFDYAAR QAGGQSFLGY TKRDHKNYLR DKRTDSLKHG VAHDEGLITN  180
IFWADGKMIR DFKIYGDIVS FDTTYRTNKE YRPLALFVGL NNHREMVIFG AALLYEESAE  240
SFEWLFNAFF RIMSAEKPKT FITDQDPAIS FAVSLVMPQT YHRLCVWHLE KNAFKHLNHV  300
FRAHASFPGD FSKLLYHYEY EEDFLFAWQE MLEKYDLGDN SWLKNTFAIR EKCSMTYGRN  360
TFSAGMRSTQ LSESFNGFLR GYLKSDLDIV QFFKHFQRSV DDKRANENKS NFDMTQRISI  420
LKVKFPLLVH AREVYTPTIF DMFQNEWERS LLVYIKSSSD EGELCTYNVS THGSVKEHVV  480
TVKRTLTEVS CSCKLFEFMG ILCRHALKIL DILNVKDMIP EHYILKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463957.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3ZI800.0A0A1S3ZI80_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009619707.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-109FAR1-related sequence 5