PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463874.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 355aa    MW: 41390.3 Da    PI: 5.1784
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.75.2e-1094172291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+   F v k++s+k+   ++    t+ C +   ++ + ++          +  +Cka+l   ++++g w+v+k++++HnH+l p
  XP_016463874.1  94 FYKEHARLREFFVIKRNSNKK-GGDTARYITYHCDRTRIHKIKFTT----------KSNNCKARLAAVLDDSGCWRVSKVVHDHNHDLLP 172
                     9************99999998.55558999******9999887665..........7789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-794172IPR004330FAR1 DNA binding domain
PfamPF105518.2E-14293341IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTSDDSLLNE YEWVDVDSHD SFNNVVHVDD DDDEEESDGE YHGEANDDED QVLGNELELC  60
DVDWEMENEF TEEDVVVGPI SGMRFRDKDT LFGFYKEHAR LREFFVIKRN SNKKGGDTAR  120
YITYHCDRTR IHKIKFTTKS NNCKARLAAV LDDSGCWRVS KVVHDHNHDL LPSVSRLMDG  180
HRFVCDSLKR DLLAHDRSGI RPSKNIRLAE VQHGGPQNLG CTPKDCRNYI LKSRNFEMQE  240
GDAQSVFNFF CEIQVKDRDF FYLIDVDNIG RLRNMVWVHS HCKATYEQFH DAICFDTTYL  300
VNRYNMPCAS FVGINHHRQS ILLGCALMSH EDIDSYKFIL KLGLMPWEMF IQMRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463874.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZHM30.0A0A1S3ZHM3_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009769143.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-37FAR1 family protein