PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016462731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 917aa MW: 101515 Da PI: 5.8909 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15 | 4.2e-05 | 689 | 749 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + ++++ e Ak+l ++t++q k+W Nr+a+ XP_016462731.1 689 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 749 79******************977761155678999*******9*****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 676 | 750 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.981 | 686 | 753 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-4 | 688 | 757 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.52E-5 | 689 | 752 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 917 aa Download sequence Send to blast |
MKEEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR FIREAENNIL QHRPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLV FYSLVILCTY SKVSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY 180 YKVDVLIDTA FAAVTADIKI LRRNLSANHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS 240 LCQQKSFRER LVKNKELSSK GGVLLLAQAV MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL 300 LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF RTGFQQSVAP SDKIYPKGLL 360 QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVAHGEF VSSWCSSDLP IREEDATLEY 420 DPFAAAGWVL DLFPFSDQSS AAMSIEPTFV PSHVPRLSYP HQRTSLLVKV LANLHCFVPD 480 ICKEEKDLFL NKFVHCLRTK VSETPEGFKS ISDSQKAATV SRNLGSLLSH AESLIPAFLN 540 EEDVQLLRVF ITQLESLITP RACGENRTQE AQNLGACLPP QLREVAMDLN NRLNQLNSRI 600 NGEGQSGEAG MKAEMTEQDK FIATDIEMKD IEKDTHNVET SGSDSSSSRS RHPTDQAGKV 660 EKINCNGPGD GREDEMAEAS QHEEKQQRKR KRTIMNEKQI SLMEKALMDE PDMQRNKASL 720 EFWAKELSVH GSEVTKSQLK NWLNNRKARL ARAAKDGRTL SEGDNLDKHC GSLVLPPCDS 780 PGSPVEDVGN LSAARENVQR VTGPAPSTCF TENPAAVSVA STETAKCMAG QYVVLVNDKA 840 EEIGRGKVCQ VSGKWYQRDL EELGTCVVDI IDLKVDRSAK LPYPSELTGT SFDQAERKFG 900 FMRVLWQSNK LFVLPAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC214463 | 1e-146 | AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence. | |||
GenBank | HG975448 | 1e-146 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-146 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462731.1 | 0.0 | PREDICTED: nodulin homeobox-like | ||||
Refseq | XP_016462732.1 | 0.0 | PREDICTED: nodulin homeobox-like | ||||
TrEMBL | A0A1S3ZEL8 | 0.0 | A0A1S3ZEL8_TOBAC; nodulin homeobox-like | ||||
STRING | XP_009778419.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7844 | 5 | 7 |