PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462421.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 317aa    MW: 36095.5 Da    PI: 7.0126
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.91.9e-14119198191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+e+A+  GF ++k++s+k+   + +   ++ C ++ k++++  +          +r +C+a+++  +e++g w+++k++++HnH+l p
  XP_016462421.1 119 DFYKEHARLSGFCIVKRTSNKK-GGDIVRYVQYGCDRSRKPRNKYFT----------KRRNCRARINGILEENGSWRISKVVKKHNHQLEP 198
                     6****************99998.66668999******9988886655..........999****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-11119198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNETSLEPLN PNNSLETRSD QLRNALHISL GLNSDDILLN EDESIDIDSN GNFNNGENHV  60
DDAAAAAADD DDGDDDIHYL EEEGEVGEDR KIPNEFNEED LIIGPITGMR FSSKDVMFDF  120
YKEHARLSGF CIVKRTSNKK GGDIVRYVQY GCDRSRKPRN KYFTKRRNCR ARINGILEEN  180
GSWRISKVVK KHNHQLEPAL SRLMAGHKSL SKSLTRALPA KNIVGLRPSK NIRVAEVLAS  240
GPENLGCTPK DYRNYILKIR KLQLQEGDAQ SLLKFFSDMQ QKDRKFYYSV DVESFGRLRN  300
IVWVHSHSKV AYESSMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462421.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZDD00.0A0A1S3ZDD0_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009594633.11e-176(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-21FAR1 family protein