PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459758.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 686aa    MW: 77902.5 Da    PI: 5.9939
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23125225197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     f+kvlt sd+ ++  l++p k a ++      + +k+ + +l+++d+sg++W++k+ + ++++r++lt+GW+ Fv++++L +gD vvF +  r +
  XP_016459758.1 125 FCKVLTASDTKSNWGLSIPQKDAVKCfppldmSRDKPIQ-ELVVKDLSGKEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVSGDLVVFLR--ReE 216
                     99****************************995555564.9************************************************4..448 PP

                     EE..EEEEE CS
              B3  89 efelvvkvf 97 
                     ++  +v+++
  XP_016459758.1 217 NGDVHVGFR 225
                     888888876 PP
2Auxin_resp29.62.9e-11251302154
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 
                     a++a++++ +F+v+ +P++  s+F+++++k+++a++  + v m fkm  e  +s
  XP_016459758.1 251 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINLGLGVSMTFKMPSEIANS 302
                     567899***********95..9*************************9997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-27116237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-34118235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-21123225No hitNo description
SMARTSM010191.9E-16125228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576125228IPR003340B3 DNA binding domain
PfamPF023626.5E-20125224IPR003340B3 DNA binding domain
PfamPF065078.7E-9251302IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MWSSHPKKQN HIASKGDDDL YRELWKAFAG QSMDVPRVGE QVYYFPGLHI KQLEQSLIRE  60
LNQGTPILDP YLKILCHAVH VRFLVENISE EIYAEINLLP KQDQTEPVNP DFYHSKIPRP  120
QIHSFCKVLT ASDTKSNWGL SIPQKDAVKC FPPLDMSRDK PIQELVVKDL SGKEWRFKHV  180
FGGHPRRHLL TNGWSAFVNS KKLVSGDLVV FLRREENGDV HVGFRHLLCQ KSSVEAPIAS  240
SLDIKGVLAV ASDALASQRP FSVYCKPQTS QFIISLNKYL EAINLGLGVS MTFKMPSEIA  300
NSHGSFTCMA NEKDQMQINQ YSQNANVFLN EDEEHMEDAE AIVYSPPRHS TTPSEIGEKR  360
HSDHTIYISP VEGNVESTYE GGTRKHNEVS NPVEIESIRG TEEHKEITTS SWNFNPIQEQ  420
ELEDAEIIKD ILPIVSQNLP LDYTVPSNTD NDQFLPIMQD SEEWQNFQGT DFPLHVQPPS  480
GNSSKSMHPT SISSHIPCDG PSHADEKVHW EGYHVAQRYI PILSRIISQY PSTLSSFKAT  540
SPIFQSMCLE ILAELVYLLG QFTTANMDIK YLSEAKRYLR DLKLSGIEIG WLEKRLAKVE  600
DIFTMKRISI RRQELVLGIE DTTATLRLMN EELGSLEKEL QKLSSNINLK TSAEDRPILE  660
VCCEFSWFNN MALCKTIGKL KFISLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-801829517296Auxin response factor 1
4ldw_A2e-801829517296Auxin response factor 1
4ldw_B2e-801829517296Auxin response factor 1
4ldx_A3e-801829517296Auxin response factor 1
4ldx_B3e-801829517296Auxin response factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459758.10.0PREDICTED: uncharacterized protein LOC107783300 isoform X1
TrEMBLA0A1S3Z5T10.0A0A1S3Z5T1_TOBAC; Auxin response factor
STRINGXP_009625168.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1534468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.17e-83auxin response factor 11