PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459429.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 319aa MW: 36194.8 Da PI: 8.5281

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ XP_016459429.1 155 FSCHLCYKTFNRYNNLQMHM 174 89*****************9 PP
2	zf-C2H2	15.8	4e-05	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_016459429.1 239 FMCRKCGKPFAVKGDWRTHEKNC 261 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.39E-5	148	177	No hit	No description
PROSITE profile	PS50157	10.18	155	182	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.12E-6	223	259	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-5	235	259	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MTEPYYNFFT GWFNFLPLHQ QYLSSPNFCY NNSNNNMNFQ EEVSLAPPPS PPLKEALPLL 60 KNVDKLDKTN TTKYSYESTT SSIAEEDNNN NENVSVSLHI GLPISPSSDL TSSRVSFSSE 120 SVGGNKEFDV PLSKLNKGQY WIPTPSQILI GPTQFSCHLC YKTFNRYNNL QMHMWGHGSQ 180 YRKGPESLRG TQPSAMLRLP CYCCAPGCKH NIDHPRARPL KDFRTLQTHY KRKHGVKPFM 240 CRKCGKPFAV KGDWRTHEKN CGKIWYCICG SDFKHKRSLK DHIKSFGRGH GAVGIPNLEE 300 LEDESTSEIE QDVGSSSPV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-152	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599843.1	0.0	PREDICTED: zinc finger protein WIP2-like
Refseq	XP_016459429.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-122	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S3Z4Z8	0.0	A0A1S3Z4Z8_TOBAC; zinc finger protein WIP2-like
STRING	XP_009599843.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-112	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]