PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016454613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 33288.6 Da PI: 6.5984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.7e-13 | 89 | 136 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk Lq XP_016454613.1 89 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136 56678*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.55E-15 | 83 | 140 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-16 | 84 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.157 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-15 | 88 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 90 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 4.12E-6 | 223 | 276 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.8E-6 | 224 | 279 | No hit | No description |
PROSITE profile | PS51671 | 9.453 | 227 | 304 | IPR002912 | ACT domain |
CDD | cd04873 | 3.87E-5 | 228 | 266 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDEGGEDCFI WENQGWGFLN SDNSGGNGAK SSGTKLPDTL QLAVSDVVAR EIEMAGPSAG 60 RKRTANGVKG NGEVNEGKVN GGRESDHEMH IWTERERRKK MRNMFSNLHA LLPQLPPKAD 120 KSTIVDEAVN YIKTLQHTLQ KLQRQKLERL HGMATSMNPS IITSQKLSAD SIISREAFLA 180 DQGSTNNAAI SPTNNAANPI SMPHFPAVFQ SWTSPNVILN VCGEEAHISV CCPKKPGLLS 240 SICYVLEKHK IEVVSAQISS NDQRNMYMIQ AHASGASDQF SETFPMEEIY KQAAGEIIMC 300 VTSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016454613.1 | 0.0 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | A0A1S3YR50 | 0.0 | A0A1S3YR50_TOBAC; transcription factor bHLH95-like | ||||
STRING | XP_009800782.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-51 | bHLH family protein |