PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016453733.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 281aa MW: 30646.1 Da PI: 6.3046

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016453733.1 165 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 212 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-17	159	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.80E-9	159	216	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.9E-18	161	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-7	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-10	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTGLLEAAAN 60 SVNESTVTEQ SGRSGGGTAA VRQRDMNSED DSSKLVSTSD ANDLQDGSVA KRQKASESKE 120 ENGGSKVEAE SSSRTVNKGT EQSSKPEPPK DYIHVRARRG QATDSHSLAE RARREKISER 180 MKILQDLVPG CNKVIGKALV LDEIINYVQS LQRQVEFLSM KLEAVNSRMS HPVETFPSKD 240 VSIWFSFSLS QVAGRWVQVY VDLRQTLYLF YLLILSNFWS R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022012	2e-65	KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784039.1	0.0	PREDICTED: transcription factor bHLH79 isoform X1
Refseq	XP_016453733.1	0.0	PREDICTED: transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	4e-74	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1S3YNP7	0.0	A0A1S3YNP7_TOBAC; transcription factor bHLH79-like isoform X1
TrEMBL	A0A1U7XAT5	0.0	A0A1U7XAT5_NICSY; transcription factor bHLH79 isoform X1
STRING	XP_009784039.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]