PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 791aa MW: 90555.4 Da PI: 6.7046 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.7e-05 | 136 | 185 | 3 | 32 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as...................k 32 +++n+ E+r+R ++ + f+ r+ lP+ ++ + XP_016450667.1 136 KKANILEQRYRTNVGELFAHVRKKLPWaDPkvvkevidaelykllgertA 185 578************************55455555555555555555552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04558 | 3.7E-56 | 9 | 165 | IPR007639 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal |
Pfam | PF04557 | 7.2E-13 | 168 | 260 | IPR007638 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 |
Pfam | PF00749 | 3.3E-121 | 267 | 572 | IPR020058 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain |
Gene3D | G3DSA:3.40.50.620 | 3.4E-39 | 267 | 336 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 9.85E-88 | 267 | 581 | No hit | No description |
CDD | cd00807 | 1.02E-139 | 267 | 577 | No hit | No description |
TIGRFAMs | TIGR00440 | 4.9E-191 | 268 | 788 | IPR004514 | Glutamine-tRNA synthetase |
PRINTS | PR00987 | 2.3E-7 | 271 | 283 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
PROSITE pattern | PS00178 | 0 | 274 | 285 | IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site |
PRINTS | PR00987 | 2.3E-7 | 300 | 313 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
Gene3D | G3DSA:3.90.800.10 | 1.4E-43 | 340 | 444 | No hit | No description |
PRINTS | PR00987 | 2.3E-7 | 445 | 455 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
Gene3D | G3DSA:3.40.50.620 | 3.4E-39 | 447 | 496 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
Gene3D | G3DSA:1.10.1160.10 | 6.4E-31 | 497 | 574 | IPR020061 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain |
SuperFamily | SSF50715 | 1.26E-56 | 575 | 785 | IPR011035 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain |
Pfam | PF03950 | 2.0E-42 | 575 | 766 | IPR020059 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain |
Gene3D | G3DSA:2.40.240.10 | 3.1E-30 | 583 | 693 | IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain |
Gene3D | G3DSA:2.40.240.10 | 1.6E-27 | 694 | 784 | IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006425 | Biological Process | glutaminyl-tRNA aminoacylation | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004819 | Molecular Function | glutamine-tRNA ligase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MVKEEDSKTL ELFLKIGLDE KTAKNTLANN KVTTNLTAVI HEAAVTDGCD RTVGNLIYTV 60 ATKFPANALN HRPTLLQYIV STKIKTPAQL EAAFTFLAAT ASGDLNTQEF EEACGVGVEV 120 SKDDIERAVS EVFEEKKANI LEQRYRTNVG ELFAHVRKKL PWADPKVVKE VIDAELYKLL 180 GERTAADNEK PVKKKKEKPV KAEDKAKVDE TPAPKPSEEE LNPYSIFPPP EENYKVHTEI 240 YFSDRPVLRA CNSKELLEKH LKVTGRKVLT RFPPEPNGYL HIGHAKAMFV DFGLAKERDG 300 GCYLRFDDTN PEAEKKEYID HIKEIVGWMG WEPYKITHTS DYFQDLYELA VELIKRGHAY 360 VDHQTAEEVK EYRERKMNSP WRDRPIEESL RLFDEMKKGM IDEGKATLRM KQDMQSDNFN 420 MYDLIAYRIK FTPHPHAGDK WCIYPSYDYA HCIVDSLENI THSLCTLEFE TRRASYYWLL 480 DALGLYQPFV WEYSRLNVSN TVMSKRKLNR LVTEKWVDGW DDPRLMTLAG LRRRGVTSTA 540 INAFVRGIGI TRSDCSMIHL SRLEYHIREE LNKTAPRTMV VLNPLKVIIT NLEAGIVTDL 600 DAKKWPEAPV NDASSFYKVP FSRVVYIERT DFRLKDSKDY FGLAPGKSVL LRYAYPIKCT 660 DVILADDKET VLEIRAEYDP SKTTKPKGVL HWVAEPSPGV DPLKVEVRLF DRLFLSENPA 720 ELEDWLGDLN PESKVVIQNA YAVPLVRTAA LGGRFQFERL GYFAVDQDST SEKLVFNRTV 780 TLRDSYAKGG K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4r3z_C | 0.0 | 9 | 788 | 30 | 798 | Glutamine--tRNA ligase |
4ye6_A | 0.0 | 9 | 788 | 7 | 775 | Glutamine--tRNA ligase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 8e-89 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 8e-89 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797950.1 | 0.0 | PREDICTED: glutamine--tRNA ligase | ||||
Refseq | XP_016450667.1 | 0.0 | PREDICTED: glutamine--tRNA ligase | ||||
Swissprot | P52780 | 0.0 | SYQ_LUPLU; Glutamine--tRNA ligase | ||||
TrEMBL | A0A1S3YF68 | 0.0 | A0A1S3YF68_TOBAC; glutamine--tRNA ligase | ||||
TrEMBL | A0A1U7YGK9 | 0.0 | A0A1U7YGK9_NICSY; glutamine--tRNA ligase | ||||
STRING | XP_009797950.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6974 | 12 | 13 |