PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448128.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 456aa MW: 49826.9 Da PI: 6.6336 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.7e-12 | 393 | 438 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L Av+YIk+L+ XP_016448128.1 393 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 438 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.881 | 387 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-15 | 390 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-11 | 391 | 442 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 392 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 393 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 393 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITSGGCGYA RDDFSQLQNS 60 RGSNSTDIEQ VFAKFVASIG NQGSNSGSFS SNQQIQENPA SNMNVRSEFI VPKQEVKQQH 120 ERLTRHRSSD YSLVSQMNYQ TQAQQQSQSQ FISSVKQEPE MNYQNLAQQQ IDNSKAATSL 180 AAVGNSFTFT TSVNSTRVSP VNIGGGVGAG GGNTNLTRYN SSPAGFFDLI NIENEYGAMR 240 GVGSYGTGAN ATAETSLSTP KRFKTQVGIS SGKPPAFPGL MTPISEIGDK VVEENSSGDE 300 HKNDESSITD FPIPSWEDSH ILSDDFLKAE DIEIEPFSNV NASDNQNCEG LSRPPIPLSH 360 HLSLPTSTLE KLLQDSTPLN VRAKRGCATH PRSIAERVRR TKISDRMRRL QELVPNMDKQ 420 TNTADMLDFA VDYIKELEKQ VKILAEKRAK CTCTNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 2e-45 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448128.1 | 0.0 | PREDICTED: uncharacterized protein LOC107773192 isoform X1 | ||||
TrEMBL | A0A1S3Y7H6 | 0.0 | A0A1S3Y7H6_TOBAC; uncharacterized protein LOC107773192 isoform X1 | ||||
STRING | XP_009620426.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-43 | bHLH family protein |