PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 128aa MW: 14597.9 Da PI: 10.4798 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H XP_016447024.1 27 FECKTCNRQFSSFQALGGHRASH 49 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H XP_016447024.1 73 HECSICGLEFPIGQALGGHMRRH 95 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.84E-9 | 25 | 95 | No hit | No description |
Pfam | PF13912 | 1.7E-12 | 26 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.201 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.2E-11 | 72 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.663 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MANYLMLLSR QENHNFETIN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KTRLMGELNF 60 NQLPTSPPKP KTHECSICGL EFPIGQALGG HMRRHRAMLN ENIQVHVVNK SKSPRVLCLD 120 LNLTPRMI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006601 | 2e-94 | AB006601.1 Petunia x hybrida mRNA for ZPT2-14, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016447024.1 | 2e-91 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 7e-30 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A1S3Y4D8 | 4e-90 | A0A1S3Y4D8_TOBAC; zinc finger protein ZAT12-like | ||||
STRING | XP_009762518.1 | 9e-73 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-34 | C2H2 family protein |