PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 362aa MW: 41190.1 Da PI: 9.3912 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.9 | 5.2e-13 | 59 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_016445426.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDVAAQRFRG 107 689***9788.8*********3.....5**********99************998 PP | |||||||
2 | B3 | 94.9 | 5.3e-30 | 190 | 286 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+g +v F +++ +++l XP_016445426.1 190 FEKAVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGYIVSFGRSNGVDKQL 283 89*************************964.45689*************************************************9876666666 PP EEE CS B3 93 vvk 95 ++ XP_016445426.1 284 YID 286 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-17 | 59 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.58E-25 | 59 | 114 | No hit | No description |
Pfam | PF00847 | 1.6E-7 | 59 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-28 | 60 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.625 | 60 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-19 | 60 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-40 | 184 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.89E-31 | 188 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.56E-27 | 189 | 273 | No hit | No description |
SMART | SM01019 | 8.1E-21 | 190 | 291 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.93 | 190 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-27 | 190 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDGSCCIEQE STTSDSPSIA PTLISTRLSR MGSGTSSVII DAELNCGIEA ESIKKLPSSR 60 FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDV AAQRFRGKDA VTNFKPLFDS 120 EKEEIEISFL NSRSKAEIVD MLRKHTYYDE LEHSKKVYSF NKNGKRTCCE DGVVTSFAVE 180 KLSKARELMF EKAVTPSDVG KLNRLVIPKQ HAERYFPLEN NSKGMLLNLE DMNGKVWRFR 240 YSYWNSSQSY VLTKGWSRFV KEKNLKAGYI VSFGRSNGVD KQLYIDWKAR ISSTTPVLDK 300 LQVQVQPVKM VRLFGVNICK VHDVNNIVVE NNLSSCNGGK RMREMESLAF ECRKKQRVID 360 AL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-55 | 187 | 293 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614561.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Refseq | XP_016445426.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-136 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1S3XZP8 | 0.0 | A0A1S3XZP8_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | XP_009614561.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-139 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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