PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444397.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 346aa    MW: 38544.3 Da    PI: 5.9048
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.52.2e-13124202191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+e+Ak  GF + k++skk    + +   ++ C ++ k+++++          +++r +C+a+++  +e++g w+v+k+++ HnH+l p
  XP_016444397.1 124 DFYKEHAKLSGFCIIKRTSKKG--GDIVRYVQYGCDRSRKPRNKH----------VTKRRNCRARINEILEENGPWRVSKVVKRHNHQLEP 202
                     6***************998887..7778999*****998887765..........55999********9*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-10124202IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNANLETSLE PLNLNNNLET RSEKLRNALH ISLGLNSDDS LMNEDESIVI DSDDNFNDRE  60
NHVDDVDAVD AADEEEDDDN DEHYLEEGGE GGADKEMSNE FNDEDPVIGS ITGTRFSNKD  120
VMFDFYKEHA KLSGFCIIKR TSKKGGDIVR YVQYGCDRSR KPRNKHVTKR RNCRARINEI  180
LEENGPWRVS KVVKRHNHQL EPTLSRLMAR HISLSKSFKR TPKDITGLRP SKDIRVAEVL  240
AGGPENLELE DIHDAEGEGE GEGEGRNITD PRYVASRGRP RLIRYRGRID LYFRSSQIGA  300
GSEVRGNRRD KGSGRGGGRS GGRGGGRGRD GGGRGGGNPR LAEGIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332GGRGRDGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444397.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like, partial
TrEMBLA0A1S3XXG90.0A0A1S3XXG9_TOBAC; protein FAR1-RELATED SEQUENCE 8-like
STRINGXP_009594633.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-08FAR1 family protein