PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443039.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 495aa MW: 54482.5 Da PI: 8.7226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016443039.1 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	12.5	0.00044	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_016443039.1 161 WKCEKCSKRYAVQSDWKAHSKIC 183 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.86E-6	84	107	No hit	No description
Pfam	PF12171	7.9E-5	85	107	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	85	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-4	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.86E-6	156	181	No hit	No description
SMART	SM00355	130	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MIKGMVGDDS MSNLTSASNE ASISSSNRTH EIGSALFPHH SLAPTNTQTQ PAPTNKKKRN 60 LPGNPDPEAE VIALSPKSLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE 120 VKKKVYVCPE PSCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS 180 KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESVRTI TTPTNPLISS SSNSHHLNLH 240 TLQNFQLKQE QQQLSNFNLL PPHPSNELSS QLFIHNPTSS SSNNIFGAAA AAHMSATALL 300 QKAAQIGVTS SSNSNSAASF FSPTTTTTTG MASCDLASRE YHQFQNISAN NSIMAPTTGN 360 FVAGHSLASY GDDNNNNKGV FDHFSVNSGF MEQIHDMQNM MAAATTALPC TNNNNVGFDE 420 GFGGANNPLI MRGKENNEGL TRDFLGLRAY PHPRDFFNNS TTTTTGLHHQ MGSSSSAAAS 480 FDHHQQNQNQ SPWQD

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MIKGMVGDDS MSNLTSASNE ASISSSNRTH EIGSALFPHH SLAPTNTQTQ PAPTNKKKRN  60
LPGNPDPEAE VIALSPKSLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE  120
VKKKVYVCPE PSCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS  180
KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESVRTI TTPTNPLISS SSNSHHLNLH  240
TLQNFQLKQE QQQLSNFNLL PPHPSNELSS QLFIHNPTSS SSNNIFGAAA AAHMSATALL  300
QKAAQIGVTS SSNSNSAASF FSPTTTTTTG MASCDLASRE YHQFQNISAN NSIMAPTTGN  360
FVAGHSLASY GDDNNNNKGV FDHFSVNSGF MEQIHDMQNM MAAATTALPC TNNNNVGFDE  420
GFGGANNPLI MRGKENNEGL TRDFLGLRAY PHPRDFFNNS TTTTTGLHHQ MGSSSSAAAS  480
FDHHQQNQNQ SPWQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	157	225	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-34	157	225	3	71	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457765	1e-140	CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBank	HG975520	1e-140	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443039.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	Q8H1F5	1e-123	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S3XT33	0.0	A0A1S3XT33_TOBAC; protein indeterminate-domain 12-like
STRING	XP_009596422.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]