PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21670.5 Da PI: 5.7956 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96 | 4e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++++++++++q+ XP_016440614.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQK 96 6*************************99******************************************************************* PP DUF260 91 kaelallk 98 ++e++l++ XP_016440614.1 97 AVETVLVG 104 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.23 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLVGGNLRPV FAGTLTPTAY 120 MDETFESFRC GGAWDIPNQF SNKSGSFIDG SDHTDTTDWV GLEKRWNTMS SIGSETELSD 180 VSLGLDSGNK EPKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783238.1 | 1e-146 | PREDICTED: LOB domain-containing protein 38-like isoform X1 | ||||
Refseq | XP_016440614.1 | 1e-146 | PREDICTED: LOB domain-containing protein 38-like isoform X1 | ||||
Swissprot | Q9SN23 | 1e-54 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1S3XLA5 | 1e-144 | A0A1S3XLA5_TOBAC; LOB domain-containing protein 38-like isoform X1 | ||||
TrEMBL | A0A1U7WXA8 | 1e-144 | A0A1U7WXA8_NICSY; LOB domain-containing protein 38-like isoform X1 | ||||
STRING | XP_009783238.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-57 | LOB domain-containing protein 38 |