PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016439329.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 1000aa MW: 110868 Da PI: 7.4521

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.1	1.4e-39	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_016439329.1 151 CCQVQDCRADLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 228 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.8E-31	146	213	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.035	149	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.24E-37	150	231	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-28	152	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.73E-7	771	880	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.3E-6	774	880	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.06E-8	774	881	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MDAHNYHGSV SGKKSMEWAS NDWKWDGDLF TAARRNNNSL PSDCCKSKQL MFPIGSEIHP 60 EASRISNCFS SGSDELLTLG SNDKGRKELE KRRRAIVIED DELDHEEEAG SLNLKLGGQL 120 YPVMEGDEEK LEGKSGKKTK IVGVSSNRAV CCQVQDCRAD LSNAKDYHRR HKVCDVHSKA 180 AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE 240 GGINYLLISL LRILTNVQSN SSDQTKDQDL LSHLMRNLAS LAGATNERNT SGLLSAPPEQ 300 WNAGTSMGAS KEDSLKPTGN CLIPASEVTE KRMGRSDVEY GISQNPCAWQ PDSLCCRKES 360 SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGAASSGCPL WICHDPHKPS 420 PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKQIL DWLSHSPTDI 480 ESYIKPGCII LTIYLRMDKS IWEELYCDLN SSLRKLLNAS ADSFWQTGWV YARVNDRVAF 540 LFNGQVVLDT SLPVKSHRSC GISIVKPIAV CASERVQFLV KGVNLSRPTT RLLCALDGNY 600 LVQGNCIDMM VGADSCMGHE DIQSLSFPCI LPNVTGRGFI EVEDHGLSSN FFPFIVAEKD 660 VCSEIRTLES NIEVAEMAGG FLQGTENLQA RDQALEFLHE MGWLLHRSHL KFRVGSGVNL 720 NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGIVDVGQ QSSLDIPLWE VGILHQAVRR 780 KCRSMVEVLL KYRPHGAFDK SGPQKQQDDR DYLFRPDAVG PGGLTPLHLV ASLSGFENIL 840 DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKISQKR GDGHVLDIPG 900 SLLDSSIKQK LSDDHRSVKV ASLQTEKSLR KPIQTHCRQC DQKLYYGNSG SSLAIYKPAM 960 LSMVAIAAIC VCVALLFKSS PEVLYSFRPF RWELLKYGSI

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MDAHNYHGSV SGKKSMEWAS NDWKWDGDLF TAARRNNNSL PSDCCKSKQL MFPIGSEIHP  60
EASRISNCFS SGSDELLTLG SNDKGRKELE KRRRAIVIED DELDHEEEAG SLNLKLGGQL  120
YPVMEGDEEK LEGKSGKKTK IVGVSSNRAV CCQVQDCRAD LSNAKDYHRR HKVCDVHSKA  180
AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE  240
GGINYLLISL LRILTNVQSN SSDQTKDQDL LSHLMRNLAS LAGATNERNT SGLLSAPPEQ  300
WNAGTSMGAS KEDSLKPTGN CLIPASEVTE KRMGRSDVEY GISQNPCAWQ PDSLCCRKES  360
SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGAASSGCPL WICHDPHKPS  420
PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKQIL DWLSHSPTDI  480
ESYIKPGCII LTIYLRMDKS IWEELYCDLN SSLRKLLNAS ADSFWQTGWV YARVNDRVAF  540
LFNGQVVLDT SLPVKSHRSC GISIVKPIAV CASERVQFLV KGVNLSRPTT RLLCALDGNY  600
LVQGNCIDMM VGADSCMGHE DIQSLSFPCI LPNVTGRGFI EVEDHGLSSN FFPFIVAEKD  660
VCSEIRTLES NIEVAEMAGG FLQGTENLQA RDQALEFLHE MGWLLHRSHL KFRVGSGVNL  720
NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGIVDVGQ QSSLDIPLWE VGILHQAVRR  780
KCRSMVEVLL KYRPHGAFDK SGPQKQQDDR DYLFRPDAVG PGGLTPLHLV ASLSGFENIL  840
DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKISQKR GDGHVLDIPG  900
SLLDSSIKQK LSDDHRSVKV ASLQTEKSLR KPIQTHCRQC DQKLYYGNSG SSLAIYKPAM  960
LSMVAIAAIC VCVALLFKSS PEVLYSFRPF RWELLKYGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	152	225	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439329.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A1S3XHK1	0.0	A0A1S3XHK1_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009793310.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12