PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 137aa MW: 15915.5 Da PI: 10.9267 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.4 | 2.3e-13 | 28 | 107 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+A+ +GF ++k+ s+k+ + + ++ C ++ k+++++ +++r +C+a+++ +e++g w+ +k++++HnH+l p XP_016439307.1 28 DFYKEHARLLGFCIVKRISNKK-GGDIVRYVQYGCDRSRKPRNKH----------VTKRRNCRARINEILEENGSWRFSKVVKKHNHHLEP 107 6****************99997.66668999*****998887765..........55999********9*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-10 | 28 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPNEFNEEDL IIGPITGMQF SSKDVTFDFY KEHARLLGFC IVKRISNKKG GDIVRYVQYG 60 CDRSRKPRNK HVTKRRNCRA RINEILEENG SWRFSKVVKK HNHHLEPVLS RLMAGHRSLS 120 KSLKRPLAAK DITGLRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439307.1 | 8e-99 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like | ||||
TrEMBL | A0A1S3XHZ5 | 2e-97 | A0A1S3XHZ5_TOBAC; protein FAR1-RELATED SEQUENCE 8-like | ||||
STRING | XP_009778050.1 | 1e-83 | (Nicotiana sylvestris) | ||||
STRING | XP_009797803.1 | 2e-81 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-11 | FAR1 family protein |