PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14271.4 Da PI: 10.4812 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.7 | 1.5e-23 | 14 | 59 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ k+y + XP_016438865.1 14 QNESNLQVTFSKRRAGLFKKASELCTLCGAEIALVVFSPGKKVYSF 59 79******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-31 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.633 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-27 | 4 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.99E-34 | 4 | 73 | No hit | No description |
PRINTS | PR00404 | 3.6E-19 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-19 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-19 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MAKGRQKVDM VKMQNESNLQ VTFSKRRAGL FKKASELCTL CGAEIALVVF SPGKKVYSFG 60 HPCVDSVMDR FLTRNSQPNN GHNQLIVAHR NASVRDLNME LTNIEGILQM EKNRGEALQA 120 RKRDNGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-16 | 4 | 87 | 2 | 84 | MEF2 CHIMERA |
6bz1_B | 2e-16 | 4 | 87 | 2 | 84 | MEF2 CHIMERA |
6bz1_C | 2e-16 | 4 | 87 | 2 | 84 | MEF2 CHIMERA |
6bz1_D | 2e-16 | 4 | 87 | 2 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438865.1 | 3e-91 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 5e-48 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3XG27 | 6e-90 | A0A1S3XG27_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009601691.1 | 7e-84 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-50 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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