PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 198aa MW: 22784.4 Da PI: 7.0204 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.4 | 7.2e-16 | 116 | 195 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+ GF ++k+ s+k+ + + + ++ C ++ k++++ +++r +C+a+++ +e++g w+++k++++HnH+l p XP_016438171.1 116 DFYKEYARLSGFCIVKKISNKK-GGDIVRQVQYGCDRSTKPRNKY----------VTKRRNCRARINGILEENGSWRISKVVKKHNHQLEP 195 6****************99997.6667999******999887765..........55999****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-13 | 116 | 195 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MYGHIRRNRI RYEDIRGKVG VTSAEDKMRL SEIEMVPACA EEIRECTNGN FNDGEDHSDD 60 AAAAAADDND DDDDHYLKEE GEGGDDRKMS NEFNEKDLVI GPITRMRFNN KDVMFDFYKE 120 YARLSGFCIV KKISNKKGGD IVRQVQYGCD RSTKPRNKYV TKRRNCRARI NGILEENGSW 180 RISKVVKKHN HQLEPALS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438171.1 | 1e-146 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3XDX7 | 1e-144 | A0A1S3XDX7_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_009621047.1 | 1e-127 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-09 | FAR1 family protein |