PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437491.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 415aa MW: 45744.6 Da PI: 8.9704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	170	193	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y Cp Cg++F+ ++L++H+ + H XP_016437491.1 170 YACPECGEVFPKIESLEHHQAVrH 193 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.512	170	198	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0025	170	193	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	172	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.4E-23	195	411	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.3E-11	196	411	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MALFTFLPEA SDTQKQPSKR RKKQQKQKQP SSWDQFKNLL SCRQIENSTD HDSSKNPTAA 60 VYYSKLGSCS SICSFNNVVL HHGNNTRVVH RADDNNSLED QSSMLGQETR LLSKKTSHGS 120 TSSRFFGSST RSNASTTSSR GMQLRKLSGC NECHMIVDPS RYPVPRSTIY ACPECGEVFP 180 KIESLEHHQA VRHAVSELGP EDSSRNIVEI IFNSSWLKKD NPICKIERIL KVHNTKRTIH 240 KFEDYRDAVK LRATVNVKKN PRCAADGNEL LRFYCTTLTC SLGAKGTSNL CSSVCTPGCG 300 VCTVIRHGFQ GNNNKVCGVR TTASSGRAHD CLGGGDGGRR AMLVCRVIAG RMKRVAEDAA 360 ATEEERGGSG SSAAGNFYDS VVGYSDIYSN LEELYVFNPR AILPCFVVIY KALES

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MALFTFLPEA SDTQKQPSKR RKKQQKQKQP SSWDQFKNLL SCRQIENSTD HDSSKNPTAA  60
VYYSKLGSCS SICSFNNVVL HHGNNTRVVH RADDNNSLED QSSMLGQETR LLSKKTSHGS  120
TSSRFFGSST RSNASTTSSR GMQLRKLSGC NECHMIVDPS RYPVPRSTIY ACPECGEVFP  180
KIESLEHHQA VRHAVSELGP EDSSRNIVEI IFNSSWLKKD NPICKIERIL KVHNTKRTIH  240
KFEDYRDAVK LRATVNVKKN PRCAADGNEL LRFYCTTLTC SLGAKGTSNL CSSVCTPGCG  300
VCTVIRHGFQ GNNNKVCGVR TTASSGRAHD CLGGGDGGRR AMLVCRVIAG RMKRVAEDAA  360
ATEEERGGSG SSAAGNFYDS VVGYSDIYSN LEELYVFNPR AILPCFVVIY KALES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781815.1	0.0	PREDICTED: uncharacterized protein LOC104230649
Refseq	XP_016437491.1	0.0	PREDICTED: uncharacterized protein LOC107763518
TrEMBL	A0A1S3XC46	0.0	A0A1S3XC46_TOBAC; uncharacterized protein LOC107763518
TrEMBL	A0A1U7X5R1	0.0	A0A1U7X5R1_NICSY; uncharacterized protein LOC104230649
STRING	XP_009781815.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-143	C2H2-like zinc finger protein