PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436950.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 999aa MW: 110973 Da PI: 6.0343

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_016436950.1 143 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 220 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-33	138	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	141	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-38	142	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.8E-30	144	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.19E-7	771	884	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.2E-5	773	885	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.05E-6	774	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIIVD ENDSGGTLSL KLGGQAEPVA 120 EKRTKLAAAA PAPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV 180 MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQASGYSLM 240 SLLKMLSNMH SNGTNHSEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS DLLNNRSILR 300 NPELASLISN GSQAPPRAKE HQFTNSAAEV PQKRLDAHDV RLEDARTASS QSPGILFPPI 360 QSNSQAYAQG RGSTTGRSKL IDFDLNDVYV DSDDNIEDID RSPVQCPSWL QQDSHQSSPP 420 QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSHSPTEIE 480 SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQNQIAF 540 VCDGQVLLDM SLPSGSDEHS TILSVRPIAV PVSGRAQFLV KGYNLSKPST RLLCALESNY 600 LVPEANNEVE EHVDGIDKDD KLQSLDFTCS VPAVTGRGFI EVEDHGLSNS FFPFIVAEED 660 VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDA 720 VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLGGTVGAGE SSFLKFALTE MGLLHRAVRR 780 NSRPLVELLL TYTPEKVADE LSSEYQSLVE ADGEFLFRPD CVGPAGLTPL HVAAGIDGSE 840 DVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKAISGHIVV 900 DIPIVPSIEN SNQKEEEFAT NSLEISMTER RPISRPCGLC HKKLAYGSRS RSLLYRPAMF 960 SMVAMAAVCV CVALLFRGSP EVLYIFRPFR WEMVDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIIVD ENDSGGTLSL KLGGQAEPVA  120
EKRTKLAAAA PAPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV  180
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQASGYSLM  240
SLLKMLSNMH SNGTNHSEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS DLLNNRSILR  300
NPELASLISN GSQAPPRAKE HQFTNSAAEV PQKRLDAHDV RLEDARTASS QSPGILFPPI  360
QSNSQAYAQG RGSTTGRSKL IDFDLNDVYV DSDDNIEDID RSPVQCPSWL QQDSHQSSPP  420
QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSHSPTEIE  480
SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQNQIAF  540
VCDGQVLLDM SLPSGSDEHS TILSVRPIAV PVSGRAQFLV KGYNLSKPST RLLCALESNY  600
LVPEANNEVE EHVDGIDKDD KLQSLDFTCS VPAVTGRGFI EVEDHGLSNS FFPFIVAEED  660
VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDA  720
VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLGGTVGAGE SSFLKFALTE MGLLHRAVRR  780
NSRPLVELLL TYTPEKVADE LSSEYQSLVE ADGEFLFRPD CVGPAGLTPL HVAAGIDGSE  840
DVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKAISGHIVV  900
DIPIVPSIEN SNQKEEEFAT NSLEISMTER RPISRPCGLC HKKLAYGSRS RSLLYRPAMF  960
SMVAMAAVCV CVALLFRGSP EVLYIFRPFR WEMVDFGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	143	217	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436950.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S3XAJ5	0.0	A0A1S3XAJ5_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009796558.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]