PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 387aa MW: 43588.2 Da PI: 9.5134 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.4 | 1.8e-13 | 63 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_016435989.1 63 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 111 78****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 105.2 | 3.4e-33 | 198 | 296 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++++ XP_016435989.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGEDKQ 292 89****************************99999****************************************************88667777 PP .EEE CS B3 92 lvvk 95 l++ XP_016435989.1 293 LYID 296 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-9 | 63 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.00E-26 | 63 | 118 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-17 | 63 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-20 | 64 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 64 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-30 | 64 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-42 | 191 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-30 | 196 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.86E-30 | 197 | 286 | No hit | No description |
Pfam | PF02362 | 2.4E-30 | 198 | 297 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-26 | 198 | 301 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.129 | 198 | 301 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEGSSSIDES TTSDSLSIAP AISTSTLPVM KSPESLCRMG SGTSVIIDAE NGVEAESRKL 60 PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR GRDAVTNFKP 120 LLENEENDDM EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KNYGFSKDGK RTYCTKDGLM 180 SSFFSSVDKV NKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGN TSKGVLLNFE 240 DLNGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGED KQLYIDFKAR 300 NATPTISPTV ASQVQVQVQV PQVQMVRLFG VNICKVPAVN NVVINNNNNN NNDNNMTSCS 360 GGKRRIEMEL LTFESCRKKQ RVIINAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-60 | 195 | 303 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU870518 | 0.0 | EU870518.1 Nicotiana tabacum RAV mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613275.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Refseq | XP_016512131.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-147 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1S3X871 | 0.0 | A0A1S3X871_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | XP_009613275.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-142 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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