PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 163aa MW: 18534.1 Da PI: 9.855 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.7 | 9.3e-14 | 29 | 107 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+e+A+ GFsv k++s+k+ ++ t++C + r+ + ++ + +Cka+l ++++g w+v+k++++HnH+l p XP_016435745.1 29 FYKEHARLRGFSVIKRNSNKK-GGDTARYITYCCDRTRIRRIKFTT----------KTNNCKARLATVLDDSGCWRVSKVVHDHNHDLLP 107 9***************99998.55558899******9999887665..........7789***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-11 | 29 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MENEFTEEDV VVGPISGMRF RDKDTLFAFY KEHARLRGFS VIKRNSNKKG GDTARYITYC 60 CDRTRIRRIK FTTKTNNCKA RLATVLDDSG CWRVSKVVHD HNHDLLPSVS HLMAGHGSVC 120 DSLKRDLVAH DRSGIRPSKN IRLDEVQRGG PQNLGCTPKD CRN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 5e-37 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435745.1 | 1e-119 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3X6Y0 | 1e-118 | A0A1S3X6Y0_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009787995.1 | 1e-107 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-11 | FAR1-related sequence 5 |