PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435545.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 910aa    MW: 100621 Da    PI: 6.9732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18322422199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_016435545.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 414
                     99**************************555567778***************9989999999***9.********************876.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  XP_016435545.1 415 LLMGFRKA 422
                     88888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-29314427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-22320421No hitNo description
SMARTSM010191.9E-20322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PfamPF023626.8E-16322422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149586636IPR011124Zinc finger, CW-type
PfamPF074963.3E-10591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MDSKICMNGV CGATSSIEWK KGWPLKSGEF ACLCDKCGTA YEQLVFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCVS CARSCQLHAT PNHVKAKAFG TSNSNSVGET  120
PSTSLGSQMN GSEPNKREGS DSVDPLLVLP HQNDNTNKPI GQIKMEEAFH PAGEPGCTFS  180
SNLCQSSAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSSNTKL FPAPVDERDL  240
NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGILSQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPDNLPLMSG YSGLLQSFKG SRESSVNLSS  480
KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS  540
WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRSSGEQE QWAQCDNCFK  600
WRRLPADYLL PPQWTCQDNI FDHSRCSCSV PDDLTPRELE YLLKMDKDLK KRRSAAGQRA  660
MHAQDPSDLD SQANGTGVAG DVREPGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEAD  780
PSDRERSGSE TLARGHSSNQ LQKLPETSKS QLDLNCHPNR EDTGSSHLSM MSLLQQASLP  840
LETYLRQNGL TSLVSEQQGS SGSQGLPPDT RESEVHIHED QCFASTTQEQ EQQEGAKENS  900
EPDQSGKDNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-683004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1645652DKDLKKRR
2730741KRRFKTLMMRKK
3730743KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547450.0AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768196.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_016435545.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S3X6D50.0A0A1S3X6D5_TOBAC; B3 domain-containing transcription repressor VAL2-like isoform X1
TrEMBLA0A1U7VTD20.0A0A1U7VTD2_NICSY; B3 domain-containing transcription repressor VAL2-like isoform X1
STRINGXP_009768196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]