PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433850.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 356aa    MW: 38805.3 Da    PI: 8.2813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.4e-12159183226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C ++++t tCk+Gd+CkF H+
  XP_016433850.1 159 GEKDCAHYMQTRTCKFGDSCKFDHP 183
                     7889********************8 PP
2zf-CCCH37.24.8e-12209234227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f++t  Ck+G+rCkF+H++
  XP_016433850.1 209 GEPDCPYFMKTQKCKFGNRCKFNHPK 234
                     6899********************96 PP
3zf-CCCH37.24.9e-12257281327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f+++tG Ck+G++CkF+H++
  XP_016433850.1 257 EPSCAFYMKTGACKFGATCKFHHPR 281
                     577********************96 PP
4zf-CCCH36.48.7e-12331356126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_016433850.1 331 PGEVDCPFYLKTGSCKYGGTCRYNHP 356
                     57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742157185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6158184IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4163182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558207235IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6207234IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9209234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4213233IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295254282IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9257281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5260281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295330356IPR000571Zinc finger, CCCH-type
SMARTSM003560.013330356IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9332356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5334355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MANQLYGYNP SSNAGIAAGS NLSRSTTRSM GDYLSTDNNK TLLGSSSYFG SSGYSFSSPT  60
MLFNQSDSYN PAASKIPGLA AYQSSWTAPP GVDVAQPPAA DSYFSSLKRS SSDALYHRTL  120
LGARNTIGQA EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF  180
DHPIWVPEGG IPDWKEVPVT TESLPERSGE PDCPYFMKTQ KCKFGNRCKF NHPKDNTAHL  240
GSVQNSDVSV LPERPSEPSC AFYMKTGACK FGATCKFHHP RDIQLPSPKQ ESGSAENPGS  300
ANNEMTEDVN LIKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-110HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433850.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like, partial
SwissprotQ941Q31e-119C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1S3X1I60.0A0A1S3X1I6_TOBAC; zinc finger CCCH domain-containing protein 37-like
STRINGXP_009601117.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-121floral homeotic protein (HUA1)