PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433120.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 132aa    MW: 14004.5 Da    PI: 7.8334
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-164479134
            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34
                    C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  XP_016433120.1 44 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 79
                    *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-113892IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.8143895IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-123990No hitNo description
Gene3DG3DSA:3.30.50.102.4E-154285IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.32E-134393No hitNo description
PROSITE patternPS0034404471IPR000679Zinc finger, GATA-type
PfamPF003201.8E-144479IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MCYIFRMQRK KGQFTSSKSI SDEAGSSSAD WNEGSGQEEQ ETSCRHCGIS SKSTPMMRRG  60
PAGPRSLCNA CGLKWANKGI LRDLSKVPTP GAQDQTAKSG EQSNGEPNGS DAMAAAAIIT  120
PDGDNTMVTA ER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331282e-42AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence.
GenBankAC2408662e-42AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence.
GenBankHG9755132e-42HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433120.13e-94PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL75e-37GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3WZH37e-93A0A1S3WZH3_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.13e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-39ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]