PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016432342.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 602aa    MW: 69289.6 Da    PI: 7.0099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016432342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-141694999
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k++ l +pk f+ ++ +g ++e     +  +  + W vk+  +     y +++GW eFv++n+L+ gD++vF+++g++ef   v++f++
  XP_016432342.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRRVDKYWLVKV--ND----YRFKAGWAEFVEENDLQLGDMLVFRYEGNMEF--EVMIFDS 94
                    456665.********.554666544...56667789*******..55....55**************************9999..8999886 PP
2B351.32.1e-16194275590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++++ l+ g ++lp +fa+    ++ ++ +l+++de+ r W++kl+ + + +r+ +++GW++F  +n+LkegD +vF+++ ++e+
  XP_016432342.1 194 TIKPYCLTYGYMYLPQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDCNNRVRIGDGWRKFIVDNRLKEGDHIVFEVVTDEET 275
                     578999999*********9444..43.3348***************5.66667799***********************8876544 PP
3B346.56.6e-15349430590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++++ l+ g l+l  +fa+    ++ ++ +l+++de+ r W++kl+ + +++r+ +++GW +F  +n+LkegD +vF+++ ++e+
  XP_016432342.1 349 TIKPYCLTYGYLYLAQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDYKNRVRIGDGWCKFIADNRLKEGDRIVFEVVTDEET 430
                     578899999*********9444..43.3348***************5.777889*************************8876554 PP
4B353.93.3e-17483572597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++ ++ +++r+ +pk fa+e+g+++++  t+ ++d++ rs e++l y+ + g++++++ W++F+ an LkegD ++F+    +++++ +k++
  XP_016432342.1 483 TVKLHHISKCRMHVPKLFARENGLSNRK-CTIAIRDSEQRSLEFRL-YSSSAGSTFIGGEWRKFCAANFLKEGDCIMFEIFA-KGEKPILKFY 572
                     4578999***************999765.5****************.9999999*************************544.7777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-20497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20797IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647795IPR003340B3 DNA binding domain
CDDcd100171.01E-15893No hitNo description
SMARTSM010191.8E-131095IPR003340B3 DNA binding domain
PfamPF023629.4E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-18188280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-17188280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084190286IPR003340B3 DNA binding domain
CDDcd100176.63E-14190268No hitNo description
SMARTSM010193.1E-13191283IPR003340B3 DNA binding domain
PfamPF023629.1E-15194275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-16343435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-15343435IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632345441IPR003340B3 DNA binding domain
CDDcd100175.82E-10345423No hitNo description
SMARTSM010191.1E-7346438IPR003340B3 DNA binding domain
PfamPF023621.9E-12349430IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-16476570IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-16479571IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644479577IPR003340B3 DNA binding domain
SMARTSM010192.6E-9480575IPR003340B3 DNA binding domain
PfamPF023621.7E-15483572IPR003340B3 DNA binding domain
CDDcd100178.58E-15487573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKVRPVKPQF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRRVDKYWL VKVNDYRFKA  60
GWAEFVEEND LQLGDMLVFR YEGNMEFEVM IFDSSHCNRE YAEYLQEEEA AATHTFGEAS  120
KNFEFEDTNN YASIPSGDRL YQSSPSTSCY LSHSRNTDDV IEIPSPGIKL SDEDSSRAEA  180
ATDKHVGHSH FVCTIKPYCL TYGYMYLPQQ FANGLSNKKC DLIIRDERQR LWNLKLSSDC  240
NNRVRIGDGW RKFIVDNRLK EGDHIVFEVV TDEETSIWKF HVVTTAETPM RKFQGGHGFE  300
AWKQPLAEIP SPDDVIEIPS PCIKSSDEDF SHAEAATDKH VGHSHFVCTI KPYCLTYGYL  360
YLAQQFANGL SNKKCDLIIR DERQRLWNLK LSSDYKNRVR IGDGWCKFIA DNRLKEGDRI  420
VFEVVTDEET SIWKFHAVTN AETPMRKFQE KPEPNIMSSY KAFPDVEAAK DMPLSRPDHF  480
ISTVKLHHIS KCRMHVPKLF ARENGLSNRK CTIAIRDSEQ RSLEFRLYSS SAGSTFIGGE  540
WRKFCAANFL KEGDCIMFEI FAKGEKPILK FYDLRANASL HPEEAKPNLD AERVSTQGLG  600
IG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432342.10.0PREDICTED: B3 domain-containing protein REM8-like isoform X1
TrEMBLA0A1S3WXJ40.0A0A1S3WXJ4_TOBAC; B3 domain-containing protein REM8-like isoform X1
STRINGXP_009590757.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.14e-37DNA binding;DNA binding;sequence-specific DNA binding transcription factors