PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 647aa MW: 72422.7 Da PI: 5.1486 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 411 | 448 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + XP_016432248.1 411 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 448 664459******************************88 PP | |||||||
2 | BELL | 123.5 | 8.6e-40 | 273 | 344 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+k +kLls+l+e+d+rY+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+da+++qi XP_016432248.1 273 EKQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAMCDQI 344 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-58 | 195 | 342 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-49 | 201 | 340 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 389 | 452 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 392 | 456 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.52E-12 | 392 | 453 | No hit | No description |
SuperFamily | SSF46689 | 2.4E-17 | 393 | 459 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-29 | 395 | 458 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 409 | 448 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MATYFPSPNN QREAETFQYF RQSLPGSYSE ASNAQENMMV FMNYSSSGTY SDMLTATSQQ 60 QNSCIDIPPV GASDSNNTSQ QEILSNLGGS RMGIHDFSAW RDSRNEMLYL SLGSNIPSGI 120 GISHVQSQNP NQGFTSFLNP PSSIPGEVSG GNVSFGDGDN SQPKQQRNAD YLPPDYPGSN 180 SEAMKGGYNS PYGTSSIGRN VPNSKYLKAA QYLLDEVVNV RKAIKEHNSK KELTKESRES 240 NGDSKNKSSD PPANGSTNPQ DSKNHQSELS QTEKQEVQNK LTKLLSMLDE IDRRYRQYYH 300 QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAM CDQIRVSRRS LGEQDASENS 360 KAVGISRLRY VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK 420 DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDIEMDSN SPSEFASRFA 480 TKDSKVEEIE ELKHNETSEY EQYNSDQILE SKSNHVADVE MEGANNAETQ SQSGMENQTH 540 RDEPRPAMDN CTLFQDTFVQ GNDRFSDFGR FGSGNVLPDG VSLTLGLQQG EGSSLPMSIE 600 SHGSYVPLRV DEIYSTAPTT MVSETTEFNC LDSGNRQHPF WLLPSAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 398 | 456 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 398 | 456 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU686379 | 0.0 | EU686379.1 Solanum etuberosum BEL30 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432248.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 1e-127 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A1S3WX53 | 0.0 | A0A1S3WX53_TOBAC; BEL1-like homeodomain protein 7 | ||||
STRING | XP_009757871.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10205 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-129 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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