PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902716.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 673aa    MW: 77989.9 Da    PI: 9.3595
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-2259144188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA++vGF +r+sk +k  ++ ++++rtf C +eg+re++k++  + +++raetr gC a++k++++++gk+++t++  +H+H 
  XP_015902716.1  59 NFYNAYAYKVGFGIRRSKGHKD-QSIKMKNRTFSCCCEGFREKDKRD-INVKSHRAETRFGCLARMKINLDQTGKYRITDFIAQHTHV 144
                     6****************99998.6667*****************999.99999**********************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1859144IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.175429465IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-8440467IPR006564Zinc finger, PMZ-type
PfamPF044341.4E-6442464IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDNDSYVSKD INMLLEDEDK KDEGNITGQE KKEAIHSKIL DEMIPKVGIE FKSEDKAYNF  60
YNAYAYKVGF GIRRSKGHKD QSIKMKNRTF SCCCEGFREK DKRDINVKSH RAETRFGCLA  120
RMKINLDQTG KYRITDFIAQ HTHVTSTPSK SHLHRSQRKL TFVQAAEIDI ADSSGIAPKA  180
SLELMAKRVG GYENLGFIRD DYKNYLKTKR TIQMKVGETA KHLSGVFAKF REFAKDFSSC  240
IYDYEEEQEF FLAWNAMLEK YDLKDNDWLI RMFDLRKKWA LVYEKYDLKD NDWLIRMFDL  300
RKKWALVYGR ETFCADMTTT QRSESMNNVI KNSVSYQHNL LRFFEHFQRL TEDCCYEELK  360
ADFKATQSTP SLSFPVEILK DAASIYTPTG FKVFQDELCK AYNCAMQIFD HIGTVTEYKL  420
TNHKKQFQHT VRYDFSDNTV ICSCRKFEFT GILCSHALKV LSSKDIKKIF IQYILKRWTK  480
SAKLGNSEFV FANTINEDPK VSLARCYKDL CRLQTQVATK AAETEETYKI ARTALAKILE  540
DVDAYLKDNN IGKSISKIVE TTTIPSASEK IKGIKSKKRV RGKSTRPRNA LERVRKKKNV  600
ALGEPSQQQS HASEIADNDV HAIPQEYQGF GFNGNHFIDN NKNIYKFDTA NVSSTKTARY  660
LWKLGFREDI EGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1576597KKRVRGKSTRPRNALERVRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902716.10.0protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-37far-red elongated hypocotyls 3