PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015902716.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 673aa MW: 77989.9 Da PI: 9.3595 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.2 | 2.4e-22 | 59 | 144 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA++vGF +r+sk +k ++ ++++rtf C +eg+re++k++ + +++raetr gC a++k++++++gk+++t++ +H+H XP_015902716.1 59 NFYNAYAYKVGFGIRRSKGHKD-QSIKMKNRTFSCCCEGFREKDKRD-INVKSHRAETRFGCLARMKINLDQTGKYRITDFIAQHTHV 144 6****************99998.6667*****************999.99999**********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-18 | 59 | 144 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.175 | 429 | 465 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.7E-8 | 440 | 467 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.4E-6 | 442 | 464 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MDNDSYVSKD INMLLEDEDK KDEGNITGQE KKEAIHSKIL DEMIPKVGIE FKSEDKAYNF 60 YNAYAYKVGF GIRRSKGHKD QSIKMKNRTF SCCCEGFREK DKRDINVKSH RAETRFGCLA 120 RMKINLDQTG KYRITDFIAQ HTHVTSTPSK SHLHRSQRKL TFVQAAEIDI ADSSGIAPKA 180 SLELMAKRVG GYENLGFIRD DYKNYLKTKR TIQMKVGETA KHLSGVFAKF REFAKDFSSC 240 IYDYEEEQEF FLAWNAMLEK YDLKDNDWLI RMFDLRKKWA LVYEKYDLKD NDWLIRMFDL 300 RKKWALVYGR ETFCADMTTT QRSESMNNVI KNSVSYQHNL LRFFEHFQRL TEDCCYEELK 360 ADFKATQSTP SLSFPVEILK DAASIYTPTG FKVFQDELCK AYNCAMQIFD HIGTVTEYKL 420 TNHKKQFQHT VRYDFSDNTV ICSCRKFEFT GILCSHALKV LSSKDIKKIF IQYILKRWTK 480 SAKLGNSEFV FANTINEDPK VSLARCYKDL CRLQTQVATK AAETEETYKI ARTALAKILE 540 DVDAYLKDNN IGKSISKIVE TTTIPSASEK IKGIKSKKRV RGKSTRPRNA LERVRKKKNV 600 ALGEPSQQQS HASEIADNDV HAIPQEYQGF GFNGNHFIDN NKNIYKFDTA NVSSTKTARY 660 LWKLGFREDI EGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 576 | 597 | KKRVRGKSTRPRNALERVRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015902716.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015902716.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-37 | far-red elongated hypocotyls 3 |