PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 27879.8 Da PI: 5.4457 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.4 | 2.4e-15 | 13 | 55 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i k nr vtfskRr+g++KKAeE L++ +a+i++s+ g+ XP_015899667.1 13 IGKKENRMVTFSKRRKGLIKKAEEFHSLTGSSIALIVISEAGR 55 67899***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.119 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-16 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-19 | 4 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-11 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-17 | 13 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-11 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-11 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGKGKRKLPM ELIGKKENRM VTFSKRRKGL IKKAEEFHSL TGSSIALIVI SEAGRPSIYG 60 APSFDSVLHR FQLQHNNNNN NNNNDEGILS SAHSNSHTTP TPETLFIGGS NQEDENLVVV 120 ADQEPWPPET LDLPHDHHRH SFDAPPSELL LIPQGGGSTT APSVPMAEDD NCLFDIDTLL 180 LLLDGKAEDN AAVNGTHPYH TPDDYENAVV VADQEPSPTA FALPHHHYSF YASPPDQVVH 240 RGSKENNAAF PIFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899667.1 | 0.0 | myocyte-specific enhancer factor 2C-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16481 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-16 | AGAMOUS-like 29 |