PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 322aa MW: 35425.4 Da PI: 6.1871 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.9 | 6.4e-14 | 15 | 58 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i++k r v+fskRr+g++KKAeE + +a+i++s+ g+ XP_015899227.1 15 LIKDKQSRMVSFSKRRHGLMKKAEEFHSISGSSIALIVLSQAGR 58 599*************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-17 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.091 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-19 | 7 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-11 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-16 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-11 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-11 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MRPMGKGKRK VAMELIKDKQ SRMVSFSKRR HGLMKKAEEF HSISGSSIAL IVLSQAGRPF 60 VYGAPCFDSV IHRFLQHQIN FNNHNHNNTN NNNNELLLLT HSHPDPSLSL PHETLLMGLG 120 RQGQGQGQGS NQEHHNAAVY GTHAQSCTTT TIPPDPTAPD NNNVVAHVAD QIQEPPWPAA 180 FLPDPTSEFL IAQGSTFTTD SDDQEENAHF DLIDVAPWLA ASPDHSFYAP LPPHDQVVDH 240 SFDVPPPPPP PPPQILIGQG STTDYSHQEY DDYLLDTAPW LAAAMPDHPF HAPPEVVSFR 300 VSNTTTPEKP RGGHGTMPPH LL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899227.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899227.1 | 0.0 | uncharacterized protein LOC107432568 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16481 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-19 | AGAMOUS-like 29 |