PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898233.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 609aa    MW: 64760.4 Da    PI: 7.297
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.7e-14129168242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnC++s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  XP_015898233.1 129 KQKQCNCRHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 168
                     89**************************.********9875 PP
2TCR50.63.8e-16213252140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_015898233.1 213 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 252
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-16128168IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.676129253IPR005172CRC domain
PfamPF036386.0E-11130165IPR005172CRC domain
SMARTSM011141.5E-19213254IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12216251IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGEGEGGDLP QKKVQSDVAA SGSASSEVPT KKLARQLDFT GYGGASVSVV LPDHPQSQTQ  60
TQSQPISKAQ PVTVPQTLAQ SPPQSSPQPQ VATVPVPPQP PIPSARVVKP ESPKSRSRPN  120
DAKDGTPKKQ KQCNCRHSRC LKLYCECFAS GIYCDGCNCV NCYNNVENEA ARREAVEATL  180
ERNPNAFRPK IASSPHGTRD NREEAGEVLI LGKHNKGCHC KKSGCLKKYC ECFQANILCS  240
ENCKCLDCKN FEGSEERQAL FHGDHGNNIA FIQQAANAAI TGAIGSSGYA SPPVTKKRKG  300
QELFFGPAAK DPSINRLGQF QQANHLKAPA PASLSSPPVA RVGSTAGLGP SKFTYRSLLA  360
DIIQPQDLKE LCSVLVVLSG EAAKAHADQR NTAEKRAEDQ TETSLASTTQ DVLQNQKESD  420
AEKAVADDCS SANQADKTGP DDCSSDGADA PKGRPMSPET LALMCDEQDT MFMATASPNG  480
MGHGCNTSSQ VPYGQGMTEV YAEQERIVLS KFRDCLTRLI ALGEIKETKC SSLARSEAVT  540
QKDSISDSTI NAKTDAGNNQ GPISNGVAKS IVIPTAKTSQ TVTATVAAPS NDHQKLPTFP  600
ENGDSRPKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-3213026211132Protein lin-54 homolog
5fd3_B7e-3213026211132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818113e-63LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132563e-63LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898233.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P5FSX70.0A0A2P5FSX7_TREOI; Lin-54-like protein
STRINGXP_010105053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-180Tesmin/TSO1-like CXC domain-containing protein