PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | G2-like | ||||||||
Protein Properties | Length: 462aa MW: 49997.4 Da PI: 8.1294 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.9e-32 | 260 | 315 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_015898154.1 260 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 315 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.72E-17 | 257 | 318 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.355 | 257 | 317 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 258 | 318 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-26 | 260 | 315 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-7 | 262 | 313 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MASPSELSLE CKPHSYSMLL KSIGDHPADQ TRKLEETLSR LEEERLKIDA FKRELPLCMQ 60 LLTQAVENSR QQLQAYRANQ GPRPVLEEFI PLKHSNSEGS EKSTNISDKA NWMTSAQLWS 120 QASDVTKPQS TITSTKEADI GFNVSPKLAF DNKLQRNNGG GAFLPFSKDR SSSSSSPTLR 180 PLPELALVST DKDLEDNKKC LEAENGVSCS RRSDNSGKIG NGGCGVIEPG KGGGSGSDGQ 240 QTNNNNNGSN TTTSSQTHRK ARRCWSPDLH RRFVNALQML GGSQVATPKQ IRELMKVDGL 300 TNDEVKSHLQ KYRLHTRRPS PSPHTAGAPA PQLVLISGIW VPPEYASAAA AAHSGAQAIY 360 SPHPASHAPP HYCAPPVPQD FYSAPTPAPA PPPPHHQLHH HTLHHQLHLY KAASQTHSSP 420 ESDARGVGGD RSESIEDGKS GSSSWKGDSS ENGGDQRNVL AN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898154.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898154.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-117 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A067KBG0 | 0.0 | A0A067KBG0_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A2C9ULC2 | 0.0 | A0A2C9ULC2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007257m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-99 | G2-like family protein |
Publications ? help Back to Top | |||
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