PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894924.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 378aa MW: 41542.6 Da PI: 5.0453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.7e-08	284	313	3	37
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK 37 ++h + Er+RR ++N+++ Lr+l+P++ +K XP_015894924.1 284 TKHLATERQRRVQLNDKYRALRSLVPNP-----TK 313 68999**********************8.....33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-7	279	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-6	282	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	284	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-5	284	313	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MYGDQNGCSF DPEENGAQSE NGFSQTQPNM NPQLPSQSSS FKLQEGTGTT TTTIDSQTGF 60 AVEENLMLSM EEFSYHQTHH HHHHRHPPQD DILAAATSMD MELQHQLALE AVESSYNSIG 120 GNNNTNWVDP HLPESPYFPA PDLLNLFNLP RCSPSSLLPN SSSNITFTQK PTTNFQNSLS 180 FLGDCHHLPT GVVADSASAS SVLYDPLFHL NLPPQPPLFR ELFQSLPNGH SLPGSKNGSL 240 FSNGGDEMEA DGGVYQEGSD GRQFENGVFE FTAHIGEGRD GKGTKHLATE RQRRVQLNDK 300 YRALRSLVPN PTKFASKVLN ELQLDLHHVA GGHVGDYYSF LFNSKIYEGS SLYASAIANK 360 LIEVLDSQYA AVPPTNSY

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MYGDQNGCSF DPEENGAQSE NGFSQTQPNM NPQLPSQSSS FKLQEGTGTT TTTIDSQTGF  60
AVEENLMLSM EEFSYHQTHH HHHHRHPPQD DILAAATSMD MELQHQLALE AVESSYNSIG  120
GNNNTNWVDP HLPESPYFPA PDLLNLFNLP RCSPSSLLPN SSSNITFTQK PTTNFQNSLS  180
FLGDCHHLPT GVVADSASAS SVLYDPLFHL NLPPQPPLFR ELFQSLPNGH SLPGSKNGSL  240
FSNGGDEMEA DGGVYQEGSD GRQFENGVFE FTAHIGEGRD GKGTKHLATE RQRRVQLNDK  300
YRALRSLVPN PTKFASKVLN ELQLDLHHVA GGHVGDYYSF LFNSKIYEGS SLYASAIANK  360
LIEVLDSQYA AVPPTNSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894924.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894924.1	0.0	transcription factor bHLH91-like
TrEMBL	A0A251QDH7	1e-79	A0A251QDH7_PRUPE; Uncharacterized protein
TrEMBL	A0A251QGX6	9e-79	A0A251QGX6_PRUPE; Uncharacterized protein
TrEMBL	M5X093	9e-80	M5X093_PRUPE; Uncharacterized protein
STRING	EMJ19477	2e-80	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-24	bHLH family protein