PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894311.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CAMTA
Protein Properties Length: 993aa    MW: 110571 Da    PI: 5.3789
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.14.5e-55151293116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk+ e+++iL+n+ek++lt+e++++p+sgsl+L+n++++r+frkDG+ w+kkkdg+tv E+he+LKvg+ e+l+cyYah+een++fqr
  XP_015894311.1  15 QEaQTRWLKPAEVLSILQNHEKYQLTQEPAQQPTSGSLFLFNKRVLRFFRKDGHRWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEENHNFQR 109
                     5669******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_015894311.1 110 RSYWMLDPAYEHIVLVHYRD 129
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.57610136IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7513131IPR005559CG-1 DNA-binding domain
PfamPF038595.9E-4816129IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-7421508IPR013783Immunoglobulin-like fold
CDDcd001020.00183423507No hitNo description
SuperFamilySSF812961.4E-17423507IPR014756Immunoglobulin E-set
PfamPF018336.1E-8423506IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.1E-15535557IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.202619711IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.48E-16622713IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-15624713IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-8636712IPR020683Ankyrin repeat-containing domain
CDDcd002043.47E-14640711No hitNo description
PROSITE profilePS5008810.339652684IPR002110Ankyrin repeat
SMARTSM002480.003652684IPR002110Ankyrin repeat
SMARTSM002482700691720IPR002110Ankyrin repeat
SMARTSM0001513769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.004770798IPR000048IQ motif, EF-hand binding site
PfamPF006120.2772790IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-7776792IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584826855IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-7826877IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.021828846IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.645850873IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4851870IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    Send to blast
MSKIQSGYDI DNLFQEAQTR WLKPAEVLSI LQNHEKYQLT QEPAQQPTSG SLFLFNKRVL  60
RFFRKDGHRW RKKKDGRTVG EAHERLKVGN AEALNCYYAH GEENHNFQRR SYWMLDPAYE  120
HIVLVHYRDI TEGKPNAESA AQLSPGSFLS FTQSPCSSTT PNQGSTSIGD LYEPCQSLTS  180
PGSIEVSSDV LMKTNGGDYF QGGERTGNLG SSTELNVSQA LRRLEEQLSL NDDSLKEFDP  240
SSSQDEDPVK SELEYDGEIP NQEQYANFHG PGHIIQDRYY SGHTGMQDNG SLHQHQFYGH  300
EYTDGRTESS SWNDVLDSCK ALSGGESQKE QLYTLQKHES PLSSGNGPTV EQEHPGWLNS  360
NGKNVENSSM LLPQEVNNFP YSSVLQSHET NSDYYMMLFG NQGRIELLES DVNLTIAQRQ  420
KFTIREICPD WGYATETTKI IIIGSFLCDS LESRWNCMFG DVEVPAQIIQ EGVIRCEAPP  480
HPSGKITLCI TSGNRVSCSE VREFEYRVKN VGSAESDSTS TGSTKSAEEL LLLVRFVQML  540
LSDSASQNGN NIGSETPRKL FADDDSWDSV IEALLVGSGT SSGTIYWLLE ELLKDKLLQW  600
ISSRSQEQIE QAGCSLSKKE QGIIHMIAGL GFEWALNPVL SSGANINFRD INGWTALHWA  660
ARFGREKMVA ALIASGAFAG AVTDPSSQDP TGKTPAAVAA ISGHRGLAGY LSEVALTSHL  720
SSLTLEESEL SKGSAEVEAE KTVNSISKQN LTISEDQLSL KDTLAAVRNA AQAAARIQSA  780
FRAHSFRKRL EKEAAASTLE EYGINSDDIK GLSMMSKMAF GNPRDYNSAA LSIQKKYRGW  840
KGRKDFLAFR QKVVKIQACV RGYQVRKHYK VICWAVGVLE KVVLRWRRKG VGLRGFRQDS  900
DSIAESEDED ILKVFRKQKV DVAIDEAVSR VLSMVDSSEA RQQYHRVLEK YRQAKQAKLS  960
GMTDNAEPST TNVADICTME DLEAYDFLDD SFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894311.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894311.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2N9HFF50.0A0A2N9HFF5_FAGSY; Uncharacterized protein
STRINGXP_008222185.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]