PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 207aa MW: 23550.9 Da PI: 9.4179 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.3 | 1.9e-26 | 42 | 131 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k e+++r++ r gC+a++ vk+ek+gkw+vt+++++HnH+l+ XP_015893684.1 42 KFYVEYARRLGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNQKGPIGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFVKDHNHPLV 131 6*********************************************9*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-24 | 42 | 131 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDLEKGDGLI DSPLEVDIGS SGGPIIEPYV GMEFDSEDDA RKFYVEYARR LGFVVRIMQR 60 RRSGIDGRTL ARRLGCNKQG FSPNQKGPIG PEKKPRPSAR EGCNATILVK MEKSGKWVVT 120 RFVKDHNHPL VVTANGFSTA GDKDKKIQEL TMELEHQERL CSTYREKLLS FMKNVEEQTE 180 ELSAKIQLIV ENVRKVESET QKHSKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893684.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893684.1 | 1e-153 | protein FAR1-RELATED SEQUENCE 5 isoform X3 | ||||
Swissprot | Q9SZL8 | 1e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P5CY12 | 1e-132 | A0A2P5CY12_TREOI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010095602.1 | 1e-129 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 4e-78 | FAR1 family protein |
Publications ? help Back to Top | |||
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