PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893436.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 331aa    MW: 36750.7 Da    PI: 5.304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-0952101154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +++ +k+L
  XP_015893436.1  52 RKTQKADREKLRRDRLNEQFVELGSALDPD----RPKNDKATILADTIQLLKDL 101
                     6788999********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-1351123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.84351101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1352120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-752105No hitNo description
PfamPF000102.3E-752101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-757107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDRIKDEALI PPNSSPSEFR QLPSDPHLLS NRSQPSSSQR AEGETKDCLA ARKTQKADRE  60
KLRRDRLNEQ FVELGSALDP DRPKNDKATI LADTIQLLKD LTSQVDKLKA EHAMLTEESR  120
ELTQEKTDLR EEKATLKSDI ENLNIQCQQR FRTIYPWTAI DHSVVMAPPS YPFPVPMAMP  180
PGSIPMHPHM QPYPFYGNQN PGVIPNPCST FVPYVTPSTL VEQQSAQYVS PFVQHGSRSN  240
ASGEQDSRNK SSGESKIEKN EDSNDITTDL ELKTPGSASD QELTSGQAKS QKSAREENNI  300
MEKSCSSRCS SSRSVQDSSS NSIVSGRDAD G
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893436.10.0transcription factor bHLH121-like
SwissprotQ9LT232e-94BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2P5C1Z61e-164A0A2P5C1Z6_PARAD; Basic helix-loop-helix transcription factor
STRINGEOX977581e-162(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-96bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]