PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 1002aa    MW: 110020 Da    PI: 4.705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-11853895246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++++ el+++av+q+G++ ++ I + ++  Rt+ q+k+++ k
   XP_015892526.1 853 TRWSKQDTELFYQAVRQFGTD-FSMIQQLFP-DRTRHQIKLKFKK 895
                      59*******************.*********.**********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.3E-29845929No hitNo description
PROSITE profilePS5129310.055850898IPR017884SANT domain
SMARTSM007177.6E-9851899IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6852895IPR009057Homeodomain-like
SuperFamilySSF466891.94E-10853901IPR009057Homeodomain-like
CDDcd001671.73E-7854895No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MDPFEDLFSE PSATVAARVG QKFKPKAKPR PRKETSASVP LVVTSDTKGK VEILCATSSE  60
TTKSTLPVGV VDDGLEIPHG SCLAITAANG TTEALENCED FLSSGLKDIT ETKNDSTEVV  120
APNWHLGFVD GSHQEVAASN IGVNEHSGFR KPESEADLLH LNVDPFTDNN VEPDASNRSE  180
QETFPSIPST LPDTIEEEPV GLDSLEFSQH GDVGKSAKKV DSVQFDSDPF GDILFEPATS  240
NTCTSHKFRP KPKPQPRKGS PTAVASTLPS VMGSPNLDTV QSVQSVDVGK GRLADQGESS  300
LATSEILGRK EPLKSIEDPC SSVLLSDTSR SLLLGDSSQS LPVDALQPEV PVLDGSGDWH  360
SSFGKPVGEN ADFFSGLECL DDFLTQPTSG MARDAIKSHC KVDMDIQHKN KFSTSFCVNN  420
DGKDSISHSE VETLSEENSC APAHGSIVVC DAAQSQTCSD YDTTQDPVSC NGALVSDKYD  480
EAQIGNGRSM TKVTGSLFDF ETLDAISEDT MASGKRAAKF QPKPKLKKGK EKPLGVESAR  540
HVQAEHLVSF ETRCMREGSI PHLEVLDDTS ARFGDSVALG STSEIQGNSE PKNVAEITRS  600
GDDILGDVMN SEDAPDMPEE VINKSGTQKA FTESIPLRKH KTSSTNSEGI EGEKSSRELR  660
KRSAQQLVDE PVDEACEPPS ISNTDVDEDD DDEYRENRPS QKKKTPRKPK KPLPESDKPV  720
RKRTKANEAP DQSTKVPPKK FSHSTRRNRR HVNKDLLDMP EDEIDPQKLS IKDLILLAEH  780
RERLAIKEAS KSNTTQANQS SENFLNKEAS HNEEDSFASE HDRYSEDGQE SCGIKPSSSY  840
INYQSFMNRT PTTRWSKQDT ELFYQAVRQF GTDFSMIQQL FPDRTRHQIK LKFKKEERQY  900
PLRLSEAVTN RAKDHSHFES VIERLQQDAS HAKQEYDRDD SIGVAGKEAE VAEGPIHDAS  960
AGATKSEFGD NVVKVQEADV EVHSPAKSDK SDDSDRWFDY DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C4e-1284394270170Transcription factor TFIIIB component B'' homolog
5n9g_H4e-1284394270170Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892526.10.0uncharacterized protein LOC107426769 isoform X1
RefseqXP_015892528.10.0uncharacterized protein LOC107426769 isoform X1
RefseqXP_024933089.10.0uncharacterized protein LOC107426769 isoform X1
RefseqXP_024933090.10.0uncharacterized protein LOC107426769 isoform X1
RefseqXP_024933091.10.0uncharacterized protein LOC107426769 isoform X1
TrEMBLA0A2P5DVP60.0A0A2P5DVP6_TREOI; TFIIIB transcription factor
STRINGXP_010105352.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-50MYB_related family protein