PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015892526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1002aa MW: 110020 Da PI: 4.705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 853 | 895 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ ++ I + ++ Rt+ q+k+++ k XP_015892526.1 853 TRWSKQDTELFYQAVRQFGTD-FSMIQQLFP-DRTRHQIKLKFKK 895 59*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 3.3E-29 | 845 | 929 | No hit | No description |
PROSITE profile | PS51293 | 10.055 | 850 | 898 | IPR017884 | SANT domain |
SMART | SM00717 | 7.6E-9 | 851 | 899 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 852 | 895 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-10 | 853 | 901 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-7 | 854 | 895 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1002 aa Download sequence Send to blast |
MDPFEDLFSE PSATVAARVG QKFKPKAKPR PRKETSASVP LVVTSDTKGK VEILCATSSE 60 TTKSTLPVGV VDDGLEIPHG SCLAITAANG TTEALENCED FLSSGLKDIT ETKNDSTEVV 120 APNWHLGFVD GSHQEVAASN IGVNEHSGFR KPESEADLLH LNVDPFTDNN VEPDASNRSE 180 QETFPSIPST LPDTIEEEPV GLDSLEFSQH GDVGKSAKKV DSVQFDSDPF GDILFEPATS 240 NTCTSHKFRP KPKPQPRKGS PTAVASTLPS VMGSPNLDTV QSVQSVDVGK GRLADQGESS 300 LATSEILGRK EPLKSIEDPC SSVLLSDTSR SLLLGDSSQS LPVDALQPEV PVLDGSGDWH 360 SSFGKPVGEN ADFFSGLECL DDFLTQPTSG MARDAIKSHC KVDMDIQHKN KFSTSFCVNN 420 DGKDSISHSE VETLSEENSC APAHGSIVVC DAAQSQTCSD YDTTQDPVSC NGALVSDKYD 480 EAQIGNGRSM TKVTGSLFDF ETLDAISEDT MASGKRAAKF QPKPKLKKGK EKPLGVESAR 540 HVQAEHLVSF ETRCMREGSI PHLEVLDDTS ARFGDSVALG STSEIQGNSE PKNVAEITRS 600 GDDILGDVMN SEDAPDMPEE VINKSGTQKA FTESIPLRKH KTSSTNSEGI EGEKSSRELR 660 KRSAQQLVDE PVDEACEPPS ISNTDVDEDD DDEYRENRPS QKKKTPRKPK KPLPESDKPV 720 RKRTKANEAP DQSTKVPPKK FSHSTRRNRR HVNKDLLDMP EDEIDPQKLS IKDLILLAEH 780 RERLAIKEAS KSNTTQANQS SENFLNKEAS HNEEDSFASE HDRYSEDGQE SCGIKPSSSY 840 INYQSFMNRT PTTRWSKQDT ELFYQAVRQF GTDFSMIQQL FPDRTRHQIK LKFKKEERQY 900 PLRLSEAVTN RAKDHSHFES VIERLQQDAS HAKQEYDRDD SIGVAGKEAE VAEGPIHDAS 960 AGATKSEFGD NVVKVQEADV EVHSPAKSDK SDDSDRWFDY DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 4e-12 | 843 | 942 | 70 | 170 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 4e-12 | 843 | 942 | 70 | 170 | Transcription factor TFIIIB component B'' homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015892526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892526.1 | 0.0 | uncharacterized protein LOC107426769 isoform X1 | ||||
Refseq | XP_015892528.1 | 0.0 | uncharacterized protein LOC107426769 isoform X1 | ||||
Refseq | XP_024933089.1 | 0.0 | uncharacterized protein LOC107426769 isoform X1 | ||||
Refseq | XP_024933090.1 | 0.0 | uncharacterized protein LOC107426769 isoform X1 | ||||
Refseq | XP_024933091.1 | 0.0 | uncharacterized protein LOC107426769 isoform X1 | ||||
TrEMBL | A0A2P5DVP6 | 0.0 | A0A2P5DVP6_TREOI; TFIIIB transcription factor | ||||
STRING | XP_010105352.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 8e-50 | MYB_related family protein |