PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892114.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 705aa    MW: 78687.7 Da    PI: 5.095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14483529455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_015892114.1 483 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYLKQLR 529
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.612479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-18481547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11483528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-15483533No hitNo description
Gene3DG3DSA:4.10.280.104.4E-19483543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDAPPSSHLQ SMLQAAVQSV QWTYSLFWQF CPQQGILVWA DGYYNGAIKT RKTVQPMEVT  60
AEEASLQRSQ QLRELYDSLS AGETNQPARR PCASLSPEDL TESEWFYLMC VSFSFPPGIG  120
LPGKAYTRRQ HVWLTGANEV DSKIFSRAIL AKSARIQTVV CVPLLDGVVE FGTTEKVQED  180
LGFIQHVKTF FVDHQHQHPP PPPPKPALSE HSTSNPATSS DHPLFQSPPL PAIYTASDPP  240
ENRNLEDEDE ELGEEEEEDE VEADSDSEAE TGRDNALTVS AQNLPVSDSA AAAEPSELMQ  300
LEMSEDIRLG SPDDASNNLD SDFHLLAVSQ SGNHPEDHQR RADSYRAEST RRWPMVTDTL  360
ESGLQPPPSS GAPLLDEFTQ DTHYSQTVSN ILQNQPSRWG DSSLPSINYV TCSTQSAFAK  420
WTFRSDHHDA PTEVTSQWLL KYILFSVPFL HTKYRDENSP KSRDADAASR FRKGTPQDEL  480
SANHVLAERR RREKLNERFI MLRSLVPFVT KMDKASILGD TIEYLKQLRK KIQDLEAHNR  540
QMEIDHQRSR SSEIQRTSSS GSLKDQQRSG VTAVDRARVG PPPPSDKRKL RIVEGSGGGA  600
KPKTVESPPP PLSPTSTATS VQVSIIECEG LLELQCQYRE GLLLDVMQLL RDLRIETTTV  660
QSSLNNGTFV AELRAKVKEN LNGKKTSIVE VKRAINQIIP HTDTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2191919192Transcription factor MYC3
4rqw_B4e-2191919192Transcription factor MYC3
4rru_A9e-21917948219Transcription factor MYC3
4rs9_A4e-2191919192Transcription factor MYC3
4ywc_A9e-21917948219Transcription factor MYC3
4ywc_B9e-21917948219Transcription factor MYC3
4yz6_A4e-2191919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487492ERRRRE
2488493RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892114.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0F7G6P00.0A0A0F7G6P0_9ROSI; Transcription factor MYC1 (Fragment)
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]