PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890729.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 333aa    MW: 37069.6 Da    PI: 6.2438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13134185155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  XP_015890729.1 134 QRMTHIAVERNRRRQMNDYLSVLRSMMPSS---YVQRGDQASIIGGAINFVKELE 185
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-14132189No hitNo description
SuperFamilySSF474594.45E-17132207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13133188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALETAIFPA DPFSSHGYKD FHTSLGGVGT WSHAAAAAAA AYTGGLEKVD TDQDLDMIWN  60
CSPNSSLPLQ SFNNDPADTI SSSAENFSGS NNNGYVVGGT VVSPVKSTVT TTITGRRKRR  120
RTRSIKNKED VENQRMTHIA VERNRRRQMN DYLSVLRSMM PSSYVQRGDQ ASIIGGAINF  180
VKELEQLLQF LETQKRNQQS DSNLSTLFSD FFTFPQYSTS TQFNNSLSSE PKTLMAEKQS  240
TAAIADVEVT MVETHASIKV LIKRHKKQLF KMVVGLHSLH LLILHLNITT VDNMVLYSFS  300
VQVEDDSQLT SVNEISASVY EMLERIQEEA EYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116121RKRRRT
3134145RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890729.10.0transcription factor bHLH94-like isoform X1
SwissprotQ9C7T42e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLW9S1T41e-115W9S1T4_9ROSA; Uncharacterized protein
STRINGXP_010106299.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]