PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890138.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 283aa    MW: 31340.5 Da    PI: 8.9655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.1e-08184225854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  XP_015890138.1 184 AARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAAHYVKFL 225
                     5699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-14177237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-14178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-13182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5185225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-5199230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDVDMLKSSA AGAAADHHHH HHHHNHSHLD MMTMMMQMEK TSEEFCDPST FQDIDFSGGT  60
TSSSSIIFNN PPNAVPVSVS QPNSVSFMGN PIQEPMTPPL HHHQPNFGSC TSSSSSRFKT  120
ISTGGGAGAM SIPNSYDNKR NSMAAMREMI FRISAMQPIH IDPESIKPPK RRNVKISRDP  180
QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAAH YVKFLKKQVQ TLEQQACANR  240
PTMGGIGFSG TQLGNSNVNY SDFMIKDCQP SHQMLGGSMH MLR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890138.10.0transcription factor HEC2-like
SwissprotQ9SND42e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2P5B2J91e-88A0A2P5B2J9_PARAD; Basic helix-loop-helix transcription factor
STRINGEMJ051574e-79(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]