PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 394aa MW: 44349.9 Da PI: 5.391 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H XP_015889403.1 4 HKCKLCLRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 267 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_015889403.1 267 YKCETCKKVFRSYQALGGHRASH 289 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.0011 | 320 | 342 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_015889403.1 320 HECPVCFRVFSSGQALGGHKRSH 342 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.34E-5 | 3 | 31 | No hit | No description |
PROSITE profile | PS50157 | 10.699 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF101447 | 3.4E-5 | 43 | 52 | No hit | No description |
SuperFamily | SSF101447 | 3.4E-5 | 181 | 204 | No hit | No description |
PROSITE profile | PS50157 | 10.118 | 267 | 294 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.38E-8 | 267 | 342 | No hit | No description |
Pfam | PF13912 | 2.4E-11 | 267 | 291 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 267 | 289 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 269 | 289 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.2E-11 | 320 | 342 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 320 | 342 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.265 | 320 | 347 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 322 | 342 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MEKHKCKLCL RSFSNGRALG GHMRSHMMNL PVPPKPEDEE ESPPPPPPPP PPQPQQTQSL 60 QPQPHPIQLT EEAESASSSS SSSDEEGTED GDEEKLGAYY GLRENPKRSI RLGDPEFSFA 120 VDAGSVVLQD RESETESSKN PTRRRSKRTR KSGMSELQYH HHHHQKIEEQ EEGVMNNNNK 180 IKFNKLSKTE SWAEPEPVSS VSDTTTEEDV AFCLMMLSRD KWKKQEQQRD EKEDQEEEQE 240 DEGERSLEDT DESEELKSSK NRTRGKYKCE TCKKVFRSYQ ALGGHRASHK KIKLSNPTYE 300 AELVQENAGT SSFIQDKKIH ECPVCFRVFS SGQALGGHKR SHVTGSSATN SVKSLIKFGG 360 DSLIDLNLPA PMDDDEISQI ELSAVSDAEF VKTH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889403.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889403.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A2C9WPI6 | 1e-152 | A0A2C9WPI6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031439m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-46 | C2H2-like zinc finger protein |