PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889303.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 355aa    MW: 40263.4 Da    PI: 6.9453
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-152673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+  ++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_015889303.1 26 RGLWSPEEDQKLIGHITSYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 73
                     788*******************************************97 PP
2Myb_DNA-binding57.33.6e-1879122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++l++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_015889303.1  79 KGSFTPEEEQLIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 122
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-241875IPR009057Homeodomain-like
PROSITE profilePS5129416.8482173IPR017930Myb domain
SuperFamilySSF466891.04E-2923120IPR009057Homeodomain-like
SMARTSM007171.7E-102575IPR001005SANT/Myb domain
PfamPF002499.4E-142673IPR001005SANT/Myb domain
CDDcd001672.88E-92973No hitNo description
PROSITE profilePS5129427.67774128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2676128IPR009057Homeodomain-like
SMARTSM007176.2E-1778126IPR001005SANT/Myb domain
PfamPF002499.6E-1779122IPR001005SANT/Myb domain
CDDcd001678.12E-1381121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRYRREGVGE FEMGGHRCCS KQKVKRGLWS PEEDQKLIGH ITSYGHGSWS SVPKLAGLQR  60
CGKSCRLRWI NYLRPDLRKG SFTPEEEQLI IDVHRILGNR WAQIAKHLPG RTDNEVKNFW  120
NSCIKKKLLS QGLDPKTHNL IPSHLRESRP APSNSNIIIP PDPKHPFPVF SVSSQMKNSL  180
VLEEDPPFSQ PLTNAIGQNI TRPTSDLIVK GQNCHDMTTI FPCHESPPIE SIPTVSCSPS  240
SSVSTTVNNP SAYGLLDDIY NWDASTFDHD QHNQAPRISM EREQYLPLIN HEQHDIDKEK  300
IWKLELDKVD HVNKLQGASS FETSSFDDFG FVEPTFTSGI ICHDLSSISD LAWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31261287108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889303.10.0myb-related protein 308-like
RefseqXP_024927869.10.0myb-related protein 308
TrEMBLA0A067LA461e-102A0A067LA46_JATCU; MYB family protein
STRINGcassava4.1_025617m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-84myb domain protein 67