PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888788.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 243aa    MW: 28037 Da    PI: 4.9073
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-193993256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++f++eq++ Le++Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  XP_015888788.1 39 KNKRRFSDEQIRSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 93
                    67889*************************************************9 PP
2HD-ZIP_I/II122.81.7e-3940131293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L ++l++
  XP_015888788.1  40 NKRRFSDEQIRSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNSLASRFESLKKEKQNLLNQLQK 131
                     79***************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-182397IPR009057Homeodomain-like
PROSITE profilePS5007118.3013595IPR001356Homeobox domain
SMARTSM003891.7E-163899IPR001356Homeobox domain
PfamPF000461.9E-163993IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-1940102IPR009057Homeodomain-like
CDDcd000864.89E-144496No hitNo description
PRINTSPR000311.0E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57591IPR000047Helix-turn-helix motif
PfamPF021832.3E-1695136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLDHAEYSYP PTATAETAAE TFSCMNQLTA STRKKKSNKN KRRFSDEQIR SLETMFESET  60
RLEPRKKLQL ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILRANYNS LASRFESLKK  120
EKQNLLNQLQ KLNDLVQRPR EEGAALNSID GESDNEEEQT KSGSQVKPSL SMEKSEHGVG  180
VLSDEDSSIK AEYFSLEEET KLVNMVEPGD DSLTTSHEDW GSLNSDCLFD ESSSGYQWWD  240
FWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888788.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888788.11e-180homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-73ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9I9241e-108B9I924_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09860.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-61homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]