PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 202aa MW: 23553.7 Da PI: 9.1566 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.1 | 7.9e-20 | 42 | 125 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+ +s+ks+r+g+i++r + C g++++++k +++++ r C+a++ +k++k+g+w+v k++ +H H+l+ XP_015886954.1 42 FYDDYARQTGFVTRVLSSRKSERDGSIISRGLGCR--GFSDNQTKV---QEQKKHRRREACTAMILLKRDKTGRWVVRKFVRDHIHPLV 125 9*********************************7..555554444...4477778899****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-17 | 42 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDEENGMIET LTRGESSICE AGNVEEPSEG MLFESEEAAR GFYDDYARQT GFVTRVLSSR 60 KSERDGSIIS RGLGCRGFSD NQTKVQEQKK HRRREACTAM ILLKRDKTGR WVVRKFVRDH 120 IHPLVVQLQT SRRTLDEKDK KIQELSAELR MKKRLSATYR EQLLAFMKDV EEHNGHLSTK 180 VQLIYDNLRE LETKTKEILH HR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886954.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886954.2 | 1e-148 | protein FAR1-RELATED SEQUENCE 2-like | ||||
Refseq | XP_015886990.2 | 1e-148 | protein FAR1-RELATED SEQUENCE 2-like | ||||
Swissprot | Q9SZL8 | 3e-16 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P5ESZ0 | 2e-99 | A0A2P5ESZ0_TREOI; FHY3/FAR1 family | ||||
STRING | VIT_05s0102g00470.t01 | 7e-94 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-59 | FAR1 family protein |
Publications ? help Back to Top | |||
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