PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26241.8 Da PI: 6.5262 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 82 | 128 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + K++K iL Av+ + +L XP_015885861.1 82 KACREKMRRDRLNDRFLELGSILYPE---RPNKMDKGVILSDAVRIVTQL 128 678**********************9...899************999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-8 | 81 | 133 | No hit | No description |
Pfam | PF00010 | 6.9E-8 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.06E-13 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-8 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 84 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 1.72E-5 | 130 | 166 | No hit | No description |
CDD | cd00890 | 3.60E-4 | 133 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MCSPGNPNWD FDYALIDDLP VPGGDLLQLG EPPSFTWPSH SFTAPTALSV EFNDSYGNSD 60 GLKETKSQKR LRPESCGASG SKACREKMRR DRLNDRFLEL GSILYPERPN KMDKGVILSD 120 AVRIVTQLRR EAQKLKESNE QLEEKINELK AEKNELRDEK QRLKAEKDTL DHQVKALSNQ 180 PGFLPPPAVP APFSAPGHVI GSKLVPLGYP GISMWQFMPP AAVDTSQDHV LRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885861.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885861.1 | 1e-175 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 3e-80 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2P5CVA0 | 1e-129 | A0A2P5CVA0_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008224874.1 | 1e-115 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 3e-74 | bHLH family protein |