PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885249.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 332aa    MW: 36947.9 Da    PI: 8.0345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13146197155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  XP_015885249.1 146 QRMTHIVVERNRRKQMNEYLAILRSLMPSS---YVQRGDQASIIGGAINFVKELE 197
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-12144201No hitNo description
PROSITE profilePS5088815.135145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16145214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MHKCLAILLR SSPTARSEGG GGGGGGSWDY DICLQEEDKA LLLGILDDNH DIDHHQSGHL  60
HANYYWDSSS SPPSALQTVK DHHQCDIPNS TSSPEACCSV DQPLPPAFQL PPMETPPLPG  120
TTTTASCRRK RRRTRTSKNK EEIENQRMTH IVVERNRRKQ MNEYLAILRS LMPSSYVQRG  180
DQASIIGGAI NFVKELEQFL QSMEGNKNKT TKQQDKSFAT TSSPLAEFFT FPQYSTRATQ  240
SGNSVAVVGA PEENETTNIA ANQNQRWAAV ADIEVTMMDC HANLKILSKK RPRQLLKMVT  300
GFQALRLTIL HLNLTTVDHM VLYTVSVKVI CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRRR
2128133RKRRRT
3146157RMTHIVVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930316.10.0transcription factor bHLH94 isoform X2
SwissprotQ9C7T44e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9GHH51e-106A0A2N9GHH5_FAGSY; Uncharacterized protein
STRINGXP_008363563.11e-104(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]