PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015883254.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 567aa MW: 62082.9 Da PI: 7.9773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015883254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8.2e-18	264	313	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_015883254.1 264 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 313 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-24	259	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	261	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-15	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.69E-15	264	315	No hit	No description
SMART	SM00353	4.9E-13	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MELPQPRPYE TEGRKPTHDF LSLYSHSTAQ QDPRTPSQGG GYLKTQDFLQ PLERIGKGAC 60 AKEEAASVEI STAEKPPPPA APPSFAHLLP GGIGTYSISH ISYFNQKVPK PEAGNVFTVA 120 QTSSNDRNDG NSNCSSYSGS GFTLWDESAV KKGETGKENM GERPGVGEPA ARVGQWALSE 180 RPSVSSSSNH RKSFGSFSSS QQSVQRNQSF MEMIKSAKGS NQEDELDEEE ELVLKKELST 240 TIHKGELRVK IDGKNSDQKA NTPRSKHSAT EQRRRSKIND RFQMLRELIP HSDQKRDKAS 300 FLLEVIEYIQ FLQEKAHKYE GSYQGWNNES TKLTPWRSNY RLGESFDQSR GIKGGSDPAV 360 VFATKFDEKN ICVSPTIPGG AQNPVESDTS TVTTFKALDH HSSMTNKAMP FPMLLQQNLF 420 PPVRSGGAVP QVHPRLPSDV ENISSQPQSQ LCQTRSCTTM DGAVANDKLK EQELTIEGGT 480 INISSAYSQG LLNTLTQALH NSGVDLSQAS ISVQIELGKR ASSKTVVATS TIKDNDIPSS 540 NQGKRHSGVE NGEDSHQSLK KLKTGKN

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MELPQPRPYE TEGRKPTHDF LSLYSHSTAQ QDPRTPSQGG GYLKTQDFLQ PLERIGKGAC  60
AKEEAASVEI STAEKPPPPA APPSFAHLLP GGIGTYSISH ISYFNQKVPK PEAGNVFTVA  120
QTSSNDRNDG NSNCSSYSGS GFTLWDESAV KKGETGKENM GERPGVGEPA ARVGQWALSE  180
RPSVSSSSNH RKSFGSFSSS QQSVQRNQSF MEMIKSAKGS NQEDELDEEE ELVLKKELST  240
TIHKGELRVK IDGKNSDQKA NTPRSKHSAT EQRRRSKIND RFQMLRELIP HSDQKRDKAS  300
FLLEVIEYIQ FLQEKAHKYE GSYQGWNNES TKLTPWRSNY RLGESFDQSR GIKGGSDPAV  360
VFATKFDEKN ICVSPTIPGG AQNPVESDTS TVTTFKALDH HSSMTNKAMP FPMLLQQNLF  420
PPVRSGGAVP QVHPRLPSDV ENISSQPQSQ LCQTRSCTTM DGAVANDKLK EQELTIEGGT  480
INISSAYSQG LLNTLTQALH NSGVDLSQAS ISVQIELGKR ASSKTVVATS TIKDNDIPSS  540
NQGKRHSGVE NGEDSHQSLK KLKTGKN

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015883254.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015883254.1	0.0	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-140	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2P5EBR7	0.0	A0A2P5EBR7_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_002514597.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-125	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]